Nucleic acid determinants for selective deamination of DNA over RNA by activation-induced deaminase. (Q37143544)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23942124%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

Nucleic acid determinants for selective deamination of DNA over RNA by activation-induced deaminase (English)

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7 March 2020

2

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7 March 2020

Rahul M. Kohli

series ordinal

4

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7 March 2020

author name string

Christopher S Nabel

series ordinal

1

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7 March 2020

Laura C Wang

series ordinal

3

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7 March 2020

language of work or name

English

0 references

publication date

13 August 2013

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Proceedings of the National Academy of Sciences of the United States of America

7 March 2020

published in

1 reference

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7 March 2020

volume

110

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7 March 2020

issue

35

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7 March 2020

page(s)

14225-14230

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Structural features of antiviral DNA cytidine deaminases

7 March 2020

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1 reference

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6 September 2017

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NMR structure of human restriction factor APOBEC3A reveals substrate binding and enzyme specificity

6 September 2017

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APOBEC3B is an enzymatic source of mutation in breast cancer.

6 September 2017

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Chromosome translocation, B cell lymphoma, and activation-induced cytidine deaminase

6 September 2017

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The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion

6 September 2017

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The biochemistry of activation-induced deaminase and its physiological functions

6 September 2017

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Mutational processes molding the genomes of 21 breast cancers

6 September 2017

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Single-stranded DNA scanning and deamination by APOBEC3G cytidine deaminase at single molecule resolution.

6 September 2017

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AID targeting in antibody diversity

6 September 2017

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Overlapping activation-induced cytidine deaminase hotspot motifs in Ig class-switch recombination

6 September 2017

1 reference

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APOBEC3A can activate the DNA damage response and cause cell-cycle arrest

6 September 2017

1 reference

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Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs

6 September 2017

1 reference

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Unlocking the sugar "steric gate" of DNA polymerases

6 September 2017

1 reference

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Uracil residues dependent on the deaminase AID in immunoglobulin gene variable and switch regions

6 September 2017

1 reference

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Association of potent human antiviral cytidine deaminases with 7SL RNA and viral RNP in HIV-1 virions

6 September 2017

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Determinants of sequence-specificity within human AID and APOBEC3G

6 September 2017

1 reference

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The B cell mutator AID promotes B lymphoid blast crisis and drug resistance in chronic myeloid leukemia

6 September 2017

1 reference

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A portable hot spot recognition loop transfers sequence preferences from APOBEC family members to activation-induced cytidine deaminase.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Dissecting APOBEC3G substrate specificity by nucleoside analog interference.

6 September 2017

1 reference

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Distinct viral determinants for the packaging of human cytidine deaminases APOBEC3G and APOBEC3C

6 September 2017

1 reference

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Single-stranded RNA facilitates nucleocapsid: APOBEC3G complex formation

6 September 2017

1 reference

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Single-stranded DNA structure and positional context of the target cytidine determine the enzymatic efficiency of AID.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

DNA deamination in immunity: AID in the context of its APOBEC relatives.

6 September 2017

1 reference

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Molecular mechanisms of antibody somatic hypermutation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Mismatch recognition and uracil excision provide complementary paths to both Ig switching and the A/T-focused phase of somatic mutation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

AID mediates hypermutation by deaminating single stranded DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

In Vitro Deamination of Cytosine to Uracil in Single-stranded DNA by Apolipoprotein B Editing Complex Catalytic Subunit 1 (APOBEC1)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Transcription-targeted DNA deamination by the AID antibody diversification enzyme

6 September 2017

1 reference

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Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase

6 September 2017

1 reference

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RNA editing enzyme APOBEC1 and some of its homologs can act as DNA mutators

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Structure and function in the uracil-DNA glycosylase superfamily

6 September 2017

1 reference

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The effect of two antipodal fluorine-induced sugar puckers on the conformation and stability of the Dickerson-Drew dodecamer duplex [d(CGCGAATTCGCG)]2

6 September 2017

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Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Altering the spectrum of immunoglobulin V gene somatic hypermutation by modifying the active site of AID.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

AID/APOBEC deaminases disfavor modified cytosines implicated in DNA demethylation.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Analysis of reptilian APOBEC1 suggests that RNA editing may not be its ancestral function

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Human uracil-DNA glycosylase deficiency associated with profoundly impaired immunoglobulin class-switch recombination

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

Deficiency in Msh2 affects the efficiency and local sequence specificity of immunoglobulin class-switch recombination: parallels with somatic hypermutation.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3761612

RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1306345110

Polynucleotide helix geometry and stability. Spectroscopic, antigenic and interferon-inducing properties of deoxyribose-, ribose-, or 2‘-deoxy-2‘-fluororibose-containing duplexes of poly(inosinic acid) . poly(cytidylic acid)

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23942124

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1306345110

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23942124%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23942124%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference