Retroelements and their impact on genome evolution and functioning (Q37569864)

21 August 2017

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title

Retroelements and their impact on genome evolution and functioning (English)

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21 August 2017

Elena Gogvadze

1

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PubMed ID

19649766

21 August 2017

Anton Buzdin

series ordinal

2

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21 August 2017

2 August 2009

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Cellular and Molecular Life Sciences

21 August 2017

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21 August 2017

66

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21 August 2017

23

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21 August 2017

3727-3742

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https://scigraph.springernature.com/pub.10.1007/s00018-009-0107-2

21 August 2017

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cites work

Controlling elements and the gene

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

A complex androgen-responsive enhancer resides 2 kilobases upstream of the mouse Slp gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

Identification and characterization of an Alu-containing, T-cell-specific enhancer located in the last intron of the human CD8 alpha gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

Retroelements and formation of chimeric retrogenes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

Alternative splicing of the human VEGFGR-3/FLT4 gene as a consequence of an integrated human endogenous retrovirus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

L1 antisense promoter drives tissue-specific transcription of human genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

Study of functional interaction between three copies of the insulator from the MDG4 transposable element in the model system of the miniwhite gene of Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00018-009-0107-2

Three independent insertions of retrovirus-like sequences in the haptoglobin gene cluster of primates

21 January 2018

1 reference

12 December 2020

Exon creation and establishment in human genes

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12 December 2020

Human L1 retrotransposition: cis preference versus trans complementation

1 reference

12 December 2020

Do LINEs have a role in X-chromosome inactivation?

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12 December 2020

Identification and characterization of a transcriptional silencer upstream of the human BRCA2 gene

1 reference

12 December 2020

Nucleotide sequence of the haptoglobin and haptoglobin-related gene pair. The haptoglobin-related gene contains a retrovirus-like element

1 reference

12 December 2020

Frequent human genomic DNA transduction driven by LINE-1 retrotransposition

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12 December 2020

DIRS-1 and the other tyrosine recombinase retrotransposons.

1 reference

12 December 2020

Genomic scrap yard: how genomes utilize all that junk

1 reference

12 December 2020

Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea.

1 reference

12 December 2020

Retroelements and the human genome: new perspectives on an old relation

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12 December 2020

SVA elements: a hominid-specific retroposon family.

1 reference

12 December 2020

Alu-containing exons are alternatively spliced

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12 December 2020

Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

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12 December 2020

Human LINE retrotransposons generate processed pseudogenes

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12 December 2020

Cytosine methylation and the ecology of intragenomic parasites

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12 December 2020

Tripartite chimeric pseudogene from the genome of rice blast fungus Magnaporthe grisea suggests double template jumps during long interspersed nuclear element (LINE) reverse transcription

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12 December 2020

The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells

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12 December 2020

Selection against LINE-1 retrotransposons results principally from their ability to mediate ectopic recombination

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12 December 2020

L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells

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12 December 2020

Mammalian microRNAs derived from genomic repeats

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12 December 2020

DNA modification of a maize transposable element correlates with loss of activity

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12 December 2020

Repeated recruitment of LTR retrotransposons as promoters by the anti-apoptotic locus NAIP during mammalian evolution

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12 December 2020

GREM, a technique for genome-wide isolation and quantitative analysis of promoter active repeats

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12 December 2020

Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germline

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12 December 2020

An intronic endogenous retrovirus-like sequence attenuates human haptoglobin-related gene expression in an orientation-dependent manner

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12 December 2020

Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner

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12 December 2020

Recombination creates novel L1 (LINE-1) elements in Rattus norvegicus

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12 December 2020

Estimating the retrotransposition rate of human Alu elements.

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12 December 2020

Do transposable elements really contribute to proteomes?

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12 December 2020

Diverse splicing patterns of exonized Alu elements in human tissues

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12 December 2020

Human genomic deletions mediated by recombination between Alu elements.

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12 December 2020

DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.

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12 December 2020

A conserved nuclear element with a role in mammalian gene regulation

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12 December 2020

Repetitive elements in the 5' untranslated region of a human zinc-finger gene modulate transcription and translation efficiency

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12 December 2020

Using Alu elements as polyadenylation sites: A case of retroposon exaptation.

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12 December 2020

Mobile elements create structural variation: analysis of a complete human genome.

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12 December 2020

Placenta-specific INSL4 expression is mediated by a human endogenous retrovirus element.

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12 December 2020

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12 December 2020

Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man.

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12 December 2020

Distance-independent inactivation of an enhancer by the suppressor of Hairy-wing DNA-binding protein of Drosophila.

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12 December 2020

Genomes were forged by massive bombardments with retroelements and retrosequences

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12 December 2020

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

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12 December 2020

Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence

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12 December 2020

Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans

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12 December 2020

Two long homologous retroviral sequence blocks in proximal Yq11 cause AZFa microdeletions as a result of intrachromosomal recombination events

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12 December 2020

APOBEC3 proteins: major players in intracellular defence against LINE-1-mediated retrotransposition

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12 December 2020

Evolutionary fate of retroposed gene copies in the human genome

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12 December 2020

Transcriptional regulation of GSDML gene by antisense-oriented HERV-H LTR element

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12 December 2020

Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons

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12 December 2020

Can ID repetitive elements serve as cis-acting dendritic targeting elements? An in vivo study

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12 December 2020

Exon shuffling by L1 retrotransposition

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12 December 2020

Retroelement distributions in the human genome: variations associated with age and proximity to genes

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12 December 2020

Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

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12 December 2020

Sense-antisense pairs in mammals: functional and evolutionary considerations

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12 December 2020

The remarkable evolutionary history of the human amylase genes

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12 December 2020

Retroviruses and primate evolution

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12 December 2020

At least 50% of human-specific HERV-K (HML-2) long terminal repeats serve in vivo as active promoters for host nonrepetitive DNA transcription

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12 December 2020

Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes

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12 December 2020

Solitary HERV-K LTRs possess bi-directional promoter activity and contain a negative regulatory element in the U5 region

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12 December 2020

Multiple effects govern endogenous retrovirus survival patterns in human gene introns

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12 December 2020

Retroviral promoters in the human genome.

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12 December 2020

The take and give between retrotransposable elements and their hosts

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12 December 2020

Hot L1s account for the bulk of retrotransposition in the human population

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12 December 2020

Current topics in genome evolution: molecular mechanisms of new gene formation

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12 December 2020

The ERV-9 LTR enhancer is not blocked by the HS5 insulator and synthesizes through the HS5 site non-coding, long RNAs that regulate LTR enhancer function

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12 December 2020

Conserved themes in small-RNA-mediated transposon control

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12 December 2020

Endogenous retrovirus long terminal repeats as ready-to-use mobile promoters: the case of primate beta3GAL-T5

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12 December 2020

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

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12 December 2020

Chimeric retrogenes suggest a role for the nucleolus in LINE amplification

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12 December 2020

A new group of tyrosine recombinase-encoding retrotransposons

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12 December 2020

The diversity of retrotransposons and the properties of their reverse transcriptases

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12 December 2020

Structure and genetics of the partially duplicated gene RP located immediately upstream of the complement C4A and the C4B genes in the HLA class III region. Molecular cloning, exon-intron structure, composite retroposon, and breakpoint of gene dupli

1 reference

12 December 2020

Mammalian non-LTR retrotransposons: for better or worse, in sickness and in health

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12 December 2020

Epigenetic interactions between transposons and genes: lessons from plants

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12 December 2020

Functional splice sites in a zebrafish LINE and their influence on zebrafish gene expression

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12 December 2020

Transposable elements and the epigenetic regulation of the genome

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12 December 2020

The impact of L1 retrotransposons on the human genome

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12 December 2020

Transcription of two human genes from a bidirectional endogenous retrovirus promoter

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12 December 2020

Discovery of a functional retrotransposon of the murine phospholipid hydroperoxide glutathione peroxidase: chromosomal localization and tissue-specific expression pattern

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12 December 2020

Evolution of the master Alu gene(s)

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12 December 2020

High frequency retrotransposition in cultured mammalian cells

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12 December 2020

Transposable element orientation bias in the Drosophila melanogaster genome.

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12 December 2020

HERV-F (XA34) is a full-length human endogenous retrovirus expressed in placental and fetal tissues

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12 December 2020

Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information

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12 December 2020

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12 December 2020

Editor meets silencer: crosstalk between RNA editing and RNA interference

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12 December 2020

Mapping patterns of CpG island methylation in normal and neoplastic cells implicates both upstream and downstream regions in de novo methylation.

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12 December 2020

Possible involvement of SINEs in mammalian-specific brain formation

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12 December 2020

The impact of multiple splice sites in human L1 elements

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12 December 2020

Molecular paleontology of transposable elements in the Drosophila melanogaster genome

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12 December 2020

Apolipoprotein(a) gene enhancer resides within a LINE element

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12 December 2020

Emergence of primate genes by retrotransposon-mediated sequence transduction

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12 December 2020

Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7.

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12 December 2020

Transposable elements and the evolution of gene expression

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12 December 2020

Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions

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12 December 2020

Intronic Alus influence alternative splicing

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12 December 2020

Transposing without ends: the non-LTR retrotransposable elements

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12 December 2020

The human growth hormone gene contains a silencer embedded within an Alu repeat in the 3'-flanking region.

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12 December 2020

A novel class of small RNAs bind to MILI protein in mouse testes

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12 December 2020

SVA elements are nonautonomous retrotransposons that cause disease in humans

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12 December 2020

Exonization of Alu-generated splice variants in the survivin gene of human and non-human primates.

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12 December 2020

Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses

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12 December 2020

A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5' boundary area of the human beta-globin locus control region.

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12 December 2020

The first reported case of Menkes disease caused by an Alu insertion mutation.

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12 December 2020

Human cis natural antisense transcripts initiated by transposable elements.

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12 December 2020

Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila

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12 December 2020

Evolution and biological significance of human retroelements

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12 December 2020

Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions

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12 December 2020

A potential role for RNA interference in controlling the activity of the human LINE-1 retrotransposon

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12 December 2020

Complex inheritance of familial hypercholanemia with associated mutations in TJP2 and BAAT.

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12 December 2020

Regulatory changes as a consequence of transposon insertion

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12 December 2020

LINE-1 elements at the sites of molecular rearrangements in Alport syndrome-diffuse leiomyomatosis

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12 December 2020

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

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12 December 2020

Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3).

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12 December 2020

Infertile Finnish Yorkshire boars carry a full-length LINE-1 retrotransposon within the KPL2 gene

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12 December 2020

Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human chromosome 19q13.12.

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12 December 2020

L1 integration in a transgenic mouse model

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12 December 2020

Molecular dissection of Penelope transposable element regulatory machinery

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12 December 2020

The biological properties and evolutionary dynamics of mammalian LINE-1 retrotransposons

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12 December 2020

Hypomethylation of retrotransposable elements correlates with genomic instability in non-small cell lung cancer.

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12 December 2020

Multiple fates of L1 retrotransposition intermediates in cultured human cells.

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12 December 2020

Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis

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12 December 2020

Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites

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12 December 2020

Biogenesis and germline functions of piRNAs

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12 December 2020

Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition

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12 December 2020

LINE-1 ORF1 protein localizes in stress granules with other RNA-binding proteins, including components of RNA interference RNA-induced silencing complex

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12 December 2020

Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution

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12 December 2020

Alu elements within human mRNAs are probable microRNA targets

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12 December 2020

Retrovirus variation and reverse transcription: abnormal strand transfers result in retrovirus genetic variation

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12 December 2020

A second gene encoding the mouse proteasome activator PA28beta subunit is part of a LINE1 element and is driven by a LINE1 promoter

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12 December 2020

Unequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease

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12 December 2020

The human genome contains many types of chimeric retrogenes generated through in vivo RNA recombination

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12 December 2020

Transposable elements as drivers of genomic and biological diversity in vertebrates

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12 December 2020

A family of human microRNA genes from miniature inverted-repeat transposable elements

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12 December 2020

Penelope-like elements--a new class of retroelements: distribution, function and possible evolutionary significance.

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12 December 2020

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

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12 December 2020

Functional noncoding sequences derived from SINEs in the mammalian genome

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12 December 2020

RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements

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12 December 2020

Transduction of 3'-flanking sequences is common in L1 retrotransposition

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12 December 2020

SINE retroposons can be used in vivo as nucleation centers for de novo methylation

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12 December 2020

LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression?

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12 December 2020

Fitness cost of LINE-1 (L1) activity in humans

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12 December 2020

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates

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12 December 2020

Initial sequencing and analysis of the human genome

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12 December 2020

The frequent transcriptional readthrough of the tobacco Tnt1 retrotransposon and its possible implications for the control of resistance genes.

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12 December 2020

10.1007/S00018-009-0107-2

Identifiers

DOI

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21 August 2017

1 reference

PubMed ID

19649766