Affinity-purification coupled to mass spectrometry: basic principles and strategies (Q38011666)

27 August 2017

title

Affinity-purification coupled to mass spectrometry: basic principles and strategies (English)

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27 August 2017

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3

Anne-Claude Gingras

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author name string

Wade H Dunham

series ordinal

1

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27 August 2017

Michael Mullin

series ordinal

2

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27 August 2017

publication date

1 May 2012

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27 August 2017

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27 August 2017

volume

12

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27 August 2017

issue

10

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27 August 2017

page(s)

1576-1590

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From large analogical instruments to small digital black boxes: 40 years of progress in mass spectrometry and its role in proteomics. Part I 1965-1984.

27 August 2017

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Defining the human deubiquitinating enzyme interaction landscape

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Affinity-purification mass spectrometry (AP-MS) of serine/threonine phosphatases

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Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

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RNA interference rescue by bacterial artificial chromosome transgenesis in mammalian tissue culture cells

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Resolving protein interactions and complexes by affinity purification followed by label-based quantitative mass spectrometry

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Systematic exploration of essential yeast gene function with temperature-sensitive mutants

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Systematic analysis of human protein complexes identifies chromosome segregation proteins

21 January 2018

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BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals

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Quantitative interaction proteomics using mass spectrometry

21 January 2018

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Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly

21 January 2018

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An interaction network of the mammalian COP9 signalosome identifies Dda1 as a core subunit of multiple Cul4-based E3 ligases

21 January 2018

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Label-free quantitative proteomics and SAINT analysis enable interactome mapping for the human Ser/Thr protein phosphatase 5

21 January 2018

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Genetic Approach to Facilitate Purification of Recombinant Proteins with a Novel Metal Chelate Adsorbent

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Affinity purification of an archaeal DNA replication protein network

21 January 2018

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The random peptide library-assisted engineering of a C-terminal affinity peptide, useful for the detection and purification of a functional Ig Fv fragment.

21 January 2018

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Towards a rigorous network of protein-protein interactions of the model sulfate reducer Desulfovibrio vulgaris Hildenborough

21 January 2018

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Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase

21 January 2018

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A targeted proteomic analysis of the ubiquitin-like modifier nedd8 and associated proteins.

21 January 2018

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Green fluorescent protein as a marker for gene expression

21 January 2018

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Extracting gene function from protein-protein interactions using Quantitative BAC InteraCtomics (QUBIC).

21 January 2018

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Fluorescent proteins as proteomic probes.

21 January 2018

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Gene fusion vectors based on the gene for staphylococcal protein A.

21 January 2018

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Comprehensive analysis of diverse ribonucleoprotein complexes.

21 January 2018

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Proteomic and genomic characterization of chromatin complexes at a boundary

21 January 2018

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21 January 2018

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21 January 2018

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A protein interaction network for pluripotency of embryonic stem cells

21 January 2018

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The protein interaction network of the human transcription machinery reveals a role for the conserved GTPase RPAP4/GPN1 and microtubule assembly in nuclear import and biogenesis of RNA polymerase II

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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An integrated workflow for charting the human interaction proteome: insights into the PP2A system

21 January 2018

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Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin

21 January 2018

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Recombineering, transfection, Western, IP and ChIP methods for protein tagging via gene targeting or BAC transgenesis.

21 January 2018

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Comparison of classical and affinity purification techniques of Mason-Pfizer monkey virus capsid protein: the alteration of the product by an affinity tag.

21 January 2018

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Construction, verification and experimental use of two epitope-tagged collections of budding yeast strains

21 January 2018

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Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

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Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins

21 January 2018

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Trim24 targets endogenous p53 for degradation

21 January 2018

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Tagging genes with cassette-exchange sites

21 January 2018

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Rapid tagging of endogenous mouse genes by recombineering and ES cell complementation of tetraploid blastocysts

21 January 2018

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A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein

21 January 2018

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A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency

21 January 2018

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Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

21 January 2018

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High-throughput generation of tagged stable cell lines for proteomic analysis

21 January 2018

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High throughput gene trapping and postinsertional modifications of gene trap alleles.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

Recombineering BAC transgenes for protein tagging

21 January 2018

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Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes

21 January 2018

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A novel, evolutionarily conserved protein phosphatase complex involved in cisplatin sensitivity

21 January 2018

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A method for the rapid and efficient elution of native affinity-purified protein A tagged complexes.

21 January 2018

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Large-scale identification of protein-protein interaction of Escherichia coli K-12

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

An efficient protein complex purification method for functional proteomics in higher eukaryotes

21 January 2018

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Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants

21 January 2018

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Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe

21 January 2018

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A tandem affinity purification-based technology platform to study the cell cycle interactome in Arabidopsis thaliana

21 January 2018

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A modified tandem affinity purification strategy identifies cofactors of the Drosophila nuclear receptor dHNF4.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

The KLHL12-Cullin-3 ubiquitin ligase negatively regulates the Wnt-beta-catenin pathway by targeting Dishevelled for degradation

21 January 2018

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Transgenic mouse proteomics identifies new 14-3-3-associated proteins involved in cytoskeletal rearrangements and cell signaling

21 January 2018

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A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

Tandem affinity purification of functional TAP-tagged proteins from human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100523

Protein profiling with Epstein-Barr nuclear antigen-1 reveals an interaction with the herpesvirus-associated ubiquitin-specific protease HAUSP/USP7.

21 January 2018

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RPAP1, a novel human RNA polymerase II-associated protein affinity purified with recombinant wild-type and mutated polymerase subunits

21 January 2018

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Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

PP4R4/KIAA1622 forms a novel stable cytosolic complex with phosphoprotein phosphatase 4

21 January 2018

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High confidence determination of specific protein-protein interactions using quantitative mass spectrometry

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

Combined use of RNAi and quantitative proteomics to study gene function in Drosophila

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

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Identification of TFB5, a new component of general transcription and DNA repair factor IIH.

21 January 2018

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

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Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

An integrated mass spectrometric and computational framework for the analysis of protein interaction networks.

21 January 2018

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Network organization of the human autophagy system

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

Modeling contaminants in AP-MS/MS experiments

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201100523

Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments

21 January 2018

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

21 January 2018

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ArrayExpress--a public repository for microarray gene expression data at the EBI

21 January 2018

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The minimum information about a proteomics experiment (MIAPE)

21 January 2018

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The minimum information required for reporting a molecular interaction experiment (MIMIx).

21 January 2018

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Molecular interaction databases

21 January 2018

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An experimentally derived confidence score for binary protein-protein interactions

21 January 2018

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An empirical framework for binary interactome mapping

21 January 2018

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Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays

21 January 2018

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Computational structural analysis of protein interactions and networks

21 January 2018

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Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product

21 January 2018

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24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1128/MCB.5.12.3610

Identifiers

DOI

10.1002/PMIC.201100523

1 reference

release_vwpikq3jqbdhjgwbsddhw6e4om

27 August 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/vwpikq3jqbdhjgwbsddhw6e4om

mapped directly with Wikidata item

24 November 2022

based on heuristic

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