The changing face of the molecular evolutionary clock (Q39149590)

9 September 2017

The changing face of the molecular evolutionary clock (English)

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9 September 2017

Simon Y W Ho

1

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9 September 2017

30 July 2014

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Trends in Ecology & Evolution

9 September 2017

8

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based on heuristic

inferred from page(s)

published in

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9 September 2017

29

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9 September 2017

496-503

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9 September 2017

9

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Evolutionary Rate at the Molecular Level

9 September 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Evolutionary rate of cistrons and DNA divergence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Immunological Time Scale for Hominid Evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Determining divergence times of the major kingdoms of living organisms with a protein clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Molecular dating when rates vary.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Molecular clocks: four decades of evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The modern molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The structure of cytochromec and the rates of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The genome as a life-history character: why rate of molecular evolution varies between mammal species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Universal pacemaker of genome evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Stability along with extreme variability in core genome evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Universal pacemaker of genome evolution in animals and fungi and variation of evolutionary rates in diverse organisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Rate variation and estimation of divergence times using strict and relaxed clocks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A dirichlet process prior for estimating lineage-specific substitution rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Evaluation of Bayesian models of substitution rate evolution--parental guidance versus mutual independence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

An examination of phylogenetic models of substitution rate variation among lineages

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A general comparison of relaxed molecular clock models

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The impact of calibration and clock-model choice on molecular estimates of divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A synchronized global sweep of the internal genes of modern avian influenza virus.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Divergence time and evolutionary rate estimation with multilocus data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The impact of the rate prior on Bayesian estimation of divergence times with multiple Loci

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Partitioning the variation in mammalian substitution rates

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The delayed rise of present-day mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The global diversity of birds in space and time

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Estimating divergence times in large molecular phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A distance-based least-square method for dating speciation events

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

treePL: divergence time estimation using penalized likelihood for large phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Estimating divergence times in large phylogenetic trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant new world phytophthora infestans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Divergence times in Caenorhabditis and Drosophila inferred from direct estimates of the neutral mutation rate.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Prospects for building large timetrees using molecular data with incomplete gene coverage among species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Genome 10K: a proposal to obtain whole-genome sequence for 10,000 vertebrate species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The i5K Initiative: Advancing Arthropod Genomics for Knowledge, Human Health, Agriculture, and the Environment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Bayesian estimation of divergence times from large sequence alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Estimating the rate of evolution of the rate of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Estimating divergence times in phylogenetic trees without a molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Inferring speciation times under an episodic molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Critiquing blind dating: the dangers of over-confident date estimates in comparative genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Watching the clock: studying variation in rates of molecular evolution between species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A total-evidence approach to dating with fossils, applied to the early radiation of the hymenoptera

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Dating primate divergences through an integrated analysis of palaeontological and molecular data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

The fossilized birth-death process for coherent calibration of divergence-time estimates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Molecular dating of phylogenies by likelihood methods: a comparison of models and a new information criterion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Rocks and clocks: calibrating the Tree of Life using fossils and molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Best practices for justifying fossil calibrations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A hierarchical Bayesian model for calibrating estimates of species divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Measurably evolving populations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

A Bayesian phylogenetic method to estimate unknown sequence ages

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Phylogenetic estimation of timescales using ancient DNA: the effects of temporal sampling scheme and uncertainty in sample ages.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Bayesian phylogenetics with BEAUti and the BEAST 1.7

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

PAML 4: phylogenetic analysis by maximum likelihood

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Calibrated tree priors for relaxed phylogenetics and divergence time estimation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Phylogenomic resolution of paleozoic divergences in harvestmen (Arachnida, Opiliones) via analysis of next-generation transcriptome data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

An integrated map of genetic variation from 1,092 human genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Inconsistency of phylogenetic estimates from concatenated data under coalescence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Gene tree discordance, phylogenetic inference and the multispecies coalescent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Bayesian inference of species trees from multilocus data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Bayesian species delimitation using multilocus sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Ancient hyaenas highlight the old problem of estimating evolutionary rates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Time-dependent rates of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Dates from the molecular clock: how wrong can we be?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Molecular clocks: when times are a-changin'

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

Quantitative Analysis of the Timing of the Origin and Diversification of Extant Placental Orders

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.TREE.2014.07.004

10.1016/J.TREE.2014.07.004

7 January 2021

Identifiers

DOI

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9 September 2017

1 reference

PubMed ID

25086668