Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI). (Q41197100)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28408603%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI) (English)

1 reference

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17 March 2020

main subject

whole genome sequencing

1 reference

4

1 reference

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17 March 2020

Chongyi Chen

1

1 reference

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17 March 2020

Dong Xing

2

1 reference

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17 March 2020

Longzhi Tan

3

1 reference

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17 March 2020

Lei Huang

6

1 reference

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17 March 2020

author name string

Guangyu Zhou

5

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17 March 2020

X Sunney Xie

7

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17 March 2020

language of work or name

English

0 references

publication date

1 April 2017

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17 March 2020

1 reference

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17 March 2020

volume

356

1 reference

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17 March 2020

page(s)

189-194

1 reference

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17 March 2020

issue

6334

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DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification.

17 March 2020

cites work

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28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair

28 September 2017

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Live births after simultaneous avoidance of monogenic diseases and chromosome abnormality by next-generation sequencing with linkage analyses

28 September 2017

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28 September 2017

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Somatic mutation in single human neurons tracks developmental and transcriptional history

28 September 2017

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Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification

28 September 2017

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Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications

28 September 2017

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Tumor evolution. High burden and pervasive positive selection of somatic mutations in normal human skin

28 September 2017

1 reference

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DNA replication origin activation in space and time

28 September 2017

1 reference

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Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Cell-of-origin chromatin organization shapes the mutational landscape of cancer

28 September 2017

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Partial uracil-DNA-glycosylase treatment for screening of ancient DNA

28 September 2017

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In vitro, long-range sequence information for de novo genome assembly via transposase contiguity

28 September 2017

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Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Clonal evolution in breast cancer revealed by single nucleus genome sequencing.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

LUMPY: a probabilistic framework for structural variant discovery.

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Reproducible copy number variation patterns among single circulating tumor cells of lung cancer patients

28 September 2017

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Massively parallel polymerase cloning and genome sequencing of single cells using nanoliter microwells

28 September 2017

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Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

28 September 2017

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28 September 2017

DNA replication timing

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Genome-scale mapping of DNase I hypersensitivity

28 September 2017

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Genome-wide copy number profiling of single cells in S-phase reveals DNA-replication domains

28 September 2017

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Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing

28 September 2017

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Genome-wide detection of single-nucleotide and copy-number variations of a single human cell

28 September 2017

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Exome sequencing identifies recurrent somatic RAC1 mutations in melanoma

28 September 2017

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Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm

28 September 2017

1 reference

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Tumour evolution inferred by single-cell sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Molecular mechanisms of ultraviolet radiation-induced DNA damage and repair

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

BEDTools: a flexible suite of utilities for comparing genomic features

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Transcription-dependent cytosine deamination is a novel mechanism in ultraviolet light-induced mutagenesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

DNA replication origin interference increases the spacing between initiation events in human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

DNA repair: dynamic defenders against cancer and aging

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Role of DNA polymerase eta in the UV mutation spectrum in human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Comprehensive human genome amplification using multiple displacement amplification

28 September 2017

1 reference

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DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Transcription of RNA templates by T7 RNA polymerase.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

RNA template-directed RNA synthesis by T7 RNA polymerase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Amplified RNA synthesized from limited quantities of heterogeneous cDNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Strand specificity for UV-induced DNA repair and mutations in the Chinese hamster HPRT gene

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G-T and A-C substitutions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Genome analyses of single human oocytes.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

T7 RNA polymerase mediates fast promoter-independent extension of unstable nucleic acid complexes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5538131

Retrograde axonal tracing with fluorescent markers

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1126%2FSCIENCE.AAK9787

Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1126%2FSCIENCE.AAK9787

Tn5 in vitro transposition

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28408603

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.AAK9787

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28408603%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28408603%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference