ANAT: a tool for constructing and analyzing functional protein networks. (Q50167630)

26 February 2018

title

ANAT: a tool for constructing and analyzing functional protein networks. (English)

1 reference

26 February 2018

10

Eytan Ruppin

1 reference

26 February 2018

Roded Sharan

11

object named as

Roded Sharan

1 reference

26 February 2018

Adi Kimchi

9

object named as

Adi Kimchi

1 reference

26 February 2018

author name string

Nir Yosef

1

1 reference

26 February 2018

Einat Zalckvar

2

1 reference

26 February 2018

Assaf D Rubinstein

3

1 reference

26 February 2018

Max Homilius

4

1 reference

26 February 2018

Nir Atias

5

1 reference

26 February 2018

Liram Vardi

6

1 reference

26 February 2018

Igor Berman

7

1 reference

26 February 2018

Hadas Zur

8

1 reference

26 February 2018

publication date

25 October 2011

1 reference

26 February 2018

published in

Science Signaling

1 reference

26 February 2018

volume

4

1 reference

26 February 2018

issue

196

1 reference

26 February 2018

page(s)

pl1

1 reference

26 February 2018

Challenges and rewards of interaction proteomics

cites work

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Network modeling links breast cancer susceptibility and centrosome dysfunction

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A network-based analysis of systemic inflammation in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Identifying regulatory subnetworks for a set of genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Toward accurate reconstruction of functional protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Parallel induction of ATM-dependent pro- and antiapoptotic signals in response to ionizing radiation in murine lymphoid tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Discovery of biological networks from diverse functional genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

cPath: open source software for collecting, storing, and querying biological pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

PIANA: protein interactions and network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Integration of biological networks and gene expression data using Cytoscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Global networks of functional coupling in eukaryotes from comprehensive data integration

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

BisoGenet: a new tool for gene network building, visualization and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Integrative platform to translate gene sets to networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

SPIKE--a database, visualization and analysis tool of cellular signaling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Discovering regulatory and signalling circuits in molecular interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Identification of functional modules using network topology and high-throughput data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

BioNet: an R-Package for the functional analysis of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

The protein-protein interaction map of Helicobacter pylori

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A map of the interactome network of the metazoan C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A protein interaction network of the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A protein interaction map of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Towards a proteome-scale map of the human protein–protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A human protein-protein interaction network: a resource for annotating the proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Large-scale mapping of human protein-protein interactions by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Large-scale identification of protein-protein interaction of Escherichia coli K-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

The BioGRID Interaction Database: 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Development of human protein reference database as an initial platform for approaching systems biology in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Transcriptional regulatory networks in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Network-based classification of breast cancer metastasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

The Gene Ontology (GO) database and informatics resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Autophagy suppresses tumorigenesis through elimination of p62

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

p62 at the crossroads of autophagy, apoptosis, and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A systems level strategy for analyzing the cell death network: implication in exploring the apoptosis/autophagy connection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Shelterin: the protein complex that shapes and safeguards human telomeres

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Telomerase in the human organism

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A genome-wide screen for Saccharomyces cerevisiae deletion mutants that affect telomere length

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Telomere length as a quantitative trait: genome-wide survey and genetic mapping of telomere length-control genes in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A genome-wide screen for essential yeast genes that affect telomere length maintenance

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A complex-centric view of protein network evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

A systems-level approach to mapping the telomere length maintenance gene circuitry

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Hypoxia and defective apoptosis drive genomic instability and tumorigenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Cell death modalities: classification and pathophysiological implications

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Life and death partners: apoptosis, autophagy and the cross-talk between them

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

IAPs, RINGs and ubiquitylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

ProViz: protein interaction visualization and exploration

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCISIGNAL.2001935

10.1126/SCISIGNAL.2001935

21 January 2018

Identifiers

DOI

1 reference

26 February 2018

PubMed ID

22028466

1 reference

26 February 2018