Small RNAs: essential regulators of gene expression and defenses against environmental stresses in plants (Q26765946)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26924473%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Small RNAs: essential regulators of gene expression and defenses against environmental stresses in plants (English)

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9 March 2020

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1

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9 March 2020

Julia A Chekanova

series ordinal

2

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9 March 2020

author name string

Hsiao-Lin V Wang

series ordinal

1

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Julia A Chekanova

series ordinal

2

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language of work or name

English

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publication date

28 February 2016

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Wiley interdisciplinary reviews. RNA

9 March 2020

published in

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9 March 2020

volume

7

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9 March 2020

issue

3

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9 March 2020

page(s)

356-381

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Genome-wide profiling and analysis of Arabidopsis siRNAs

9 March 2020

cites work

1 reference

Biogenesis, turnover, and mode of action of plant microRNAs

21 April 2017

1 reference

Evolution of Arabidopsis MIR genes generates novel microRNA classes

21 April 2017

1 reference

SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis

21 April 2017

1 reference

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

21 April 2017

1 reference

A pathogen-inducible endogenous siRNA in plant immunity

21 April 2017

1 reference

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis.

21 April 2017

1 reference

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

21 April 2017

1 reference

Mechanisms of alternative pre-messenger RNA splicing

21 April 2017

1 reference

The spliceosome: design principles of a dynamic RNP machine

21 April 2017

1 reference

Epigenetics in alternative pre-mRNA splicing

21 April 2017

1 reference

TIA-1 is a translational silencer that selectively regulates the expression of TNF-alpha

21 April 2017

1 reference

MicroRNA control of PHABULOSA in leaf development: importance of pairing to the microRNA 5' region

21 April 2017

1 reference

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 April 2017

1 reference

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 April 2017

1 reference

The DNA Damage Response: Making It Safe to Play with Knives

21 April 2017

1 reference

Site-specific DICER and DROSHA RNA products control the DNA-damage response

21 April 2017

1 reference

Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

21 April 2017

1 reference

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

21 April 2017

1 reference

The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers

21 April 2017

1 reference

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing

21 April 2017

1 reference

The Nuclear-Retained Noncoding RNA MALAT1 Regulates Alternative Splicing by Modulating SR Splicing Factor Phosphorylation

21 April 2017

1 reference

Cloning and domain structure of the mammalian splicing factor U2AF

21 April 2017

1 reference

Organizing principles of mammalian nonsense-mediated mRNA decay

21 April 2017

1 reference

Ago1 Interacts with RNA polymerase II and binds to the promoters of actively transcribed genes in human cancer cells

21 April 2017

1 reference

The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

21 April 2017

1 reference

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing

21 April 2017

1 reference

Antisense transcription in the mammalian transcriptome

21 April 2017

1 reference

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

21 April 2017

1 reference

Molecular chaperones in protein folding and proteostasis

21 April 2017

1 reference

Control of translation and mRNA degradation by miRNAs and siRNAs

21 April 2017

1 reference

microRNA-directed phasing during trans-acting siRNA biogenesis in plants

21 April 2017

1 reference

Eukaryotic stress granules: the ins and outs of translation

21 April 2017

1 reference

Molecular chaperones and protein quality control

21 April 2017

1 reference

Towards a molecular understanding of microRNA-mediated gene silencing

21 April 2017

1 reference

Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

21 January 2018

1 reference

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants

21 January 2018

1 reference

DNA methylation mediated by a microRNA pathway

21 January 2018

1 reference

siRNAs from miRNA sites mediate DNA methylation of target genes

21 January 2018

1 reference

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

21 January 2018

1 reference

RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

21 January 2018

1 reference

Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs

21 January 2018

1 reference

A two-hit trigger for siRNA biogenesis in plants

21 January 2018

1 reference

Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation

21 January 2018

1 reference

Pattern formation via small RNA mobility.

21 January 2018

1 reference

tasiRNA-ARF pathway moderates floral architecture in Arabidopsis plants subjected to drought stress.

21 January 2018

1 reference

Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks

21 January 2018

1 reference

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.

21 January 2018

1 reference

Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues.

21 January 2018

1 reference

A novel class of bacteria-induced small RNAs in Arabidopsis.

21 January 2018

1 reference

A role for small RNAs in DNA double-strand break repair.

21 January 2018

1 reference

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

21 January 2018

1 reference

Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium.

21 January 2018

1 reference

RNA-mediated epigenetic regulation of gene expression

21 January 2018

1 reference

Classification and comparison of small RNAs from plants

21 January 2018

1 reference

Different means, same end-heterochromatin formation by RNAi and RNAi-independent RNA processing factors in fission yeast

21 January 2018

1 reference

Ago2 facilitates Rad51 recruitment and DNA double-strand break repair by homologous recombination

21 January 2018

1 reference

Understanding splicing regulation through RNA splicing maps

21 January 2018

1 reference

Control of alternative splicing through siRNA-mediated transcriptional gene silencing.

21 January 2018

1 reference

Gene silencing: small RNAs control RNA polymerase II elongation.

21 January 2018

1 reference

Argonaute proteins couple chromatin silencing to alternative splicing.

21 January 2018

1 reference

Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression.

21 January 2018

1 reference

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells

21 January 2018

1 reference

Alternative splicing at the intersection of biological timing, development, and stress responses

21 January 2018

1 reference

The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci

21 January 2018

1 reference

DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons

21 January 2018

1 reference

A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing

21 January 2018

1 reference

Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes

21 January 2018

1 reference

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

21 January 2018

1 reference

The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs.

21 January 2018

1 reference

Role of RNA polymerase IV in plant small RNA metabolism

21 January 2018

1 reference

RNA polymerase V-dependent small RNAs in Arabidopsis originate from small, intergenic loci including most SINE repeats.

21 January 2018

1 reference

Interplay among RNA polymerases II, IV and V in RNA-directed DNA methylation at a low copy transgene locus in Arabidopsis thaliana.

21 January 2018

1 reference

Distinct and concurrent pathways of Pol II- and Pol IV-dependent siRNA biogenesis at a repetitive trans-silencer locus in Arabidopsis thaliana

21 January 2018

1 reference

Epigenetic regulation of stress responses in plants

21 January 2018

1 reference

The RdDM pathway is required for basal heat tolerance in Arabidopsis

21 January 2018

1 reference

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

21 January 2018

1 reference

Stress-induced activation of heterochromatic transcription.

21 January 2018

1 reference

Widespread dynamic DNA methylation in response to biotic stress

21 January 2018

1 reference

Epigenetic inheritance in plants.

21 January 2018

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An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

21 January 2018

1 reference

Identification of genes preventing transgenerational transmission of stress-induced epigenetic states

21 January 2018

1 reference

Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance

21 January 2018

1 reference

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

21 January 2018

1 reference

RNAi keeps Atf1-bound stress response genes in check at nuclear pores

21 January 2018

1 reference

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

21 January 2018

1 reference

DNA methylation mediated control of gene expression is critical for development of crown gall tumors

21 January 2018

1 reference

Reconstructing de novo silencing of an active plant retrotransposon.

21 January 2018

1 reference

Roles of plant small RNAs in biotic stress responses

21 January 2018

1 reference

VIGS, HIGS and FIGS: small RNA silencing in the interactions of viruses or filamentous organisms with their plant hosts

21 January 2018

1 reference

Functions of microRNAs in plant stress responses

21 January 2018

1 reference

MicroRNA functions in stress responses.

21 January 2018

1 reference

Transcriptional regulation of Arabidopsis MIR168a and argonaute1 homeostasis in abscisic acid and abiotic stress responses

21 January 2018

1 reference

Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs

21 January 2018

1 reference

Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana

21 January 2018

1 reference

Cell-to-cell and long-distance siRNA movement in plants: mechanisms and biological implications

21 January 2018

1 reference

Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis

21 January 2018

1 reference

MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

21 January 2018

1 reference

MicroRNA regulation of plant innate immune receptors.

21 January 2018

1 reference

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

21 January 2018

1 reference

A global non-coding RNA system modulates fission yeast protein levels in response to stress.

21 January 2018

1 reference

Natural antisense transcripts are co-expressed with sense mRNAs in synaptoneurosomes of adult mouse forebrain

21 January 2018

1 reference

Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis

21 January 2018

1 reference

Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster

21 January 2018

1 reference

Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training

21 January 2018

1 reference

Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues

21 January 2018

1 reference

Hypomethylation of the paternally inherited LRRTM1 promoter linked to schizophrenia

21 January 2018

1 reference

An integrated genomic analysis of gene-function correlation on schizophrenia susceptibility genes.

21 January 2018

1 reference

A direct role for small non-coding RNAs in DNA damage response

21 January 2018

1 reference

qiRNA is a new type of small interfering RNA induced by DNA damage.

21 January 2018

1 reference

Drosophila rasiRNA pathway mutations disrupt embryonic axis specification through activation of an ATR/Chk2 DNA damage response

21 January 2018

1 reference

A critical role for histone H2AX in recruitment of repair factors to nuclear foci after DNA damage

21 January 2018

1 reference

GammaH2AX and its role in DNA double-strand break repair

21 January 2018

1 reference

Alternative splicing: enhancing ability to cope with stress via transcriptome plasticity.

21 January 2018

1 reference

Complexity of the alternative splicing landscape in plants.

21 January 2018

1 reference

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

21 January 2018

1 reference

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

21 January 2018

1 reference

Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis

21 January 2018

1 reference

Functional consequences of developmentally regulated alternative splicing

21 January 2018

1 reference

Widespread inhibition of posttranscriptional splicing shapes the cellular transcriptome following heat shock

21 January 2018

1 reference

Ordered and dynamic assembly of single spliceosomes

21 January 2018

1 reference

Deciphering the splicing code

21 January 2018

1 reference

Nascent-seq indicates widespread cotranscriptional pre-mRNA splicing in Drosophila

21 January 2018

1 reference

How slow RNA polymerase II elongation favors alternative exon skipping.

21 January 2018

1 reference

Co-transcriptional commitment to alternative splice site selection.

21 January 2018

1 reference

A slow RNA polymerase II affects alternative splicing in vivo

21 January 2018

1 reference

Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation

21 January 2018

1 reference

Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing

21 January 2018

1 reference

Regulation of alternative splicing by histone modifications

21 January 2018

1 reference

Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons.

21 January 2018

1 reference

Relationship between nucleosome positioning and DNA methylation

21 January 2018

1 reference

Conservation and divergence of methylation patterning in plants and animals

21 January 2018

1 reference

High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing

21 January 2018

1 reference

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

21 January 2018

1 reference

HP1 is involved in regulating the global impact of DNA methylation on alternative splicing

21 January 2018

1 reference

Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition

21 January 2018

1 reference

The alternative role of DNA methylation in splicing regulation

21 January 2018

1 reference

Regulation of alternative splicing through coupling with transcription and chromatin structure

21 January 2018

1 reference

The influence of Argonaute proteins on alternative RNA splicing

21 January 2018

1 reference

Long noncoding RNA modulates alternative splicing regulators in Arabidopsis

21 January 2018

1 reference

Long non-coding RNAs and their functions in plants.

21 January 2018

1 reference

Long noncoding RNAs with snoRNA ends

21 January 2018

1 reference

Introns targeted by plant microRNAs: a possible novel mechanism of gene regulation

21 January 2018

1 reference

MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis

21 January 2018

1 reference

Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

21 January 2018

1 reference

Mechanical devices of the spliceosome: motors, clocks, springs, and things

21 January 2018

1 reference

Nonsense-mediated mRNA decay (NMD) mechanisms

21 January 2018

1 reference

Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing.

21 January 2018

1 reference

Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation

21 January 2018

1 reference

Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila

21 January 2018

1 reference

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription

21 January 2018

1 reference

Novel features of the XRN-family in Arabidopsis: evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm

21 January 2018

1 reference

ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2.

21 January 2018

1 reference

A link between mRNA turnover and RNA interference in Arabidopsis.

21 January 2018

1 reference

A link between RNA metabolism and silencing affecting Arabidopsis development.

21 January 2018

1 reference

XRN4 and LARP1 are required for a heat-triggered mRNA decay pathway involved in plant acclimation and survival during thermal stress.

21 January 2018

1 reference

Restoration of correct splicing in thalassemic pre-mRNA by antisense oligonucleotides

21 January 2018

1 reference

Antisense correction of SMN2 splicing in the CNS rescues necrosis in a type III SMA mouse model

21 January 2018

1 reference

RNA therapeutics: beyond RNA interference and antisense oligonucleotides

21 January 2018

1 reference

21 January 2018

Nuclear stress bodies

1 reference

Single-molecule imaging of transcriptionally coupled and uncoupled splicing

21 January 2018

1 reference

A first line of stress defense: small heat shock proteins and their function in protein homeostasis

21 January 2018

1 reference

A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin Signaling

21 January 2018

1 reference

Arabidopsis HDA6 is required for freezing tolerance

21 January 2018

1 reference

The evolutionary landscape of alternative splicing in vertebrate species

21 January 2018

1 reference

Genetic and functional diversification of small RNA pathways in plants

21 January 2018

1 reference

12 December 2020

mRNA turnover meets RNA interference

1 reference

12 December 2020

The RNA silencing enzyme RNA polymerase v is required for plant immunity

1 reference

12 December 2020

Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.

1 reference

12 December 2020

Stress-induced alternative splicing provides a mechanism for the regulation of microRNA processing in Arabidopsis thaliana

1 reference

12 December 2020

Identifiers

DOI

10.1002/WRNA.1340

2 references

Consolidated OpenCitations Corpus – April 2017

2760798

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26924473%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

2760798

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26924473%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

PubMed publication ID

26924473

2 references

Consolidated OpenCitations Corpus – April 2017

2760798