Elucidation of the binding preferences of peptide recognition modules: SH3 and PDZ domains (Q27006986)

Sachdev S. Sidhu

series ordinal

2

1 reference

Philip M. Kim

series ordinal

3

1 reference

language of work or name

1 reference

14 August 2012

1 reference

1 reference

586

1 reference

PubMed

issue

17

1 reference

PubMed

page(s)

2631-7

1 reference

Signaling through scaffold, anchoring, and adaptor proteins

PubMed

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

From Src Homology domains to other signaling modules: proposal of the 'protein recognition code'.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Normalization of nomenclature for peptide motifs as ligands of modular protein domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Recognition of unique carboxyl-terminal motifs by distinct PDZ domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

PDZ domain of neuronal nitric oxide synthase recognizes novel C-terminal peptide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Convergent and divergent ligand specificity among PDZ domains of the LAP and zonula occludens (ZO) families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Grb2 SH3 binding to peptides from Sos: evaluation of a general model for SH3-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

The ScPex13p SH3 domain exposes two distinct binding sites for Pex5p and Pex14p

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Novel Src homology 3 domain-binding motifs identified from proteomic screen of a Pro-rich region

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A noncanonical SH3 domain binding motif links BK channels to the actin cytoskeleton via the SH3 adapter cortactin

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Recognition of non-canonical peptides by the yeast Fus1p SH3 domain: elucidation of a common mechanism for diverse SH3 domain specificities

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

SMART 7: recent updates to the protein domain annotation resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

P2Y1 receptor signaling is controlled by interaction with the PDZ scaffold NHERF-2

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

PDZ domain binding selectivity is optimized across the mouse proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Peptide arrays on cellulose support: SPOT synthesis, a time and cost efficient method for synthesis of large numbers of peptides in a parallel and addressable fashion

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

An improved method for the synthesis of cellulose membrane-bound peptides with free C termini is useful for PDZ domain binding studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Protein interaction networks by proteome peptide scanning

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

The protein interaction network mediated by human SH3 domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A specificity map for the PDZ domain family

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Contextual specificity in peptide-mediated protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

The multiple-specificity landscape of modular peptide recognition domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

High-resolution mapping of protein sequence-function relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

SH2 Domains Recognize Contextual Peptide Sequence Information to Determine Selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Uncovering quantitative protein interaction networks for mouse PDZ domains using protein microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Predicting PDZ domain-peptide interactions from primary sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Interaction prediction and classification of PDZ domains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Inferring PDZ domain multi-mutant binding preferences from single-mutant data

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Characterization of PDZ domain-peptide interaction interface based on energetic patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Structure-based prediction of the Saccharomyces cerevisiae SH3-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A motif-based profile scanning approach for genome-wide prediction of signaling pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

MOTIPS: automated motif analysis for predicting targets of modular protein domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Systematic discovery of new recognition peptides mediating protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Prediction of protein binding regions in disordered proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Analysis of molecular recognition features (MoRFs)

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Evidence for the concerted evolution between short linear protein motifs and their flanking regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

ELM: the status of the 2010 eukaryotic linear motif resource

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Prediction of short linear protein binding regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Evolving specificity from variability for protein interaction domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Versatile retargeting of SH3 domain binding by modification of non-conserved loop residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

In vitro evolution of recognition specificity mediated by SH3 domains reveals target recognition rules

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A novel, non-immunogenic Fyn SH3-derived binding protein with tumor vascular targeting properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Rewiring cells: synthetic biology as a tool to interrogate the organizational principles of living systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Building blocks for protein interaction devices.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Reprogramming control of an allosteric signaling switch through modular recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Engineering synthetic signaling proteins with ultrasensitive input/output control

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A mechanism for cell-cycle regulation of MAP kinase signaling in a yeast differentiation pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Signaling dynamics of the KSR1 scaffold complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Inhibition of Wnt signaling by Dishevelled PDZ peptides

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Biomimetic divalent ligands for the acute disruption of synaptic AMPAR stabilization

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

A high-affinity, dimeric inhibitor of PSD-95 bivalently interacts with PDZ1-2 and protects against ischemic brain damage

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Synthetic therapeutic peptides: science and market

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Peptides as signaling inhibitors for mammalian MAP kinase cascades

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Targeting rho GTPases by peptidic structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

How many drug targets are there?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

PepX: a structural database of non-redundant protein-peptide complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

SCOWLP update: 3D classification of protein-protein, -peptide, -saccharide and -nucleic acid interactions, and structure-based binding inferences across folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Bcl-2 family proteins as targets for anticancer drug design

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Activation of apoptosis in vivo by a hydrocarbon-stapled BH3 helix

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

IAP-targeted therapies for cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043

Studying binding specificities of peptide recognition modules by high-throughput phage display selections

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.05.043