Computing exact p-values for a cross-correlation shotgun proteomics score function (Q34157708)

31 July 2017

title

Computing exact p-values for a cross-correlation shotgun proteomics score function (English)

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31 July 2017

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2

William Stafford Noble

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31 July 2017

J Jeffry Howbert

1

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31 July 2017

publication date

2 June 2014

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Molecular & Cellular Proteomics

31 July 2017

published in

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31 July 2017

volume

13

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31 July 2017

issue

9

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31 July 2017

page(s)

2467-2479

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Fast and accurate database searches with MS-GF+Percolator

31 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Determining the calibration of confidence estimation procedures for unique peptides in shotgun proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

False discovery rates in spectral identification

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Comet: an open-source MS/MS sequence database search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

RAId_aPS: MS/MS analysis with multiple scoring functions and spectrum-specific statistics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Peptide identification from mixture tandem mass spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Comparison of database search strategies for high precursor mass accuracy MS/MS data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Statistical calibration of the SEQUEST XCorr function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

High quality catalog of proteotypic peptides from human heart

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

ProbIDtree: an automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Probability-based protein identification by searching sequence databases using mass spectrometry data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4159662

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.O113.036327

A fast SEQUEST cross correlation algorithm

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.O113.036327

Rapid and accurate peptide identification from tandem mass spectra

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.O113.036327

A method for reducing the time required to match protein sequences with tandem mass spectra

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24895379

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.O113.036327

1 reference

31 July 2017

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31 July 2017

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