The X family portrait: structural insights into biological functions of X family polymerases. (Q36248608)

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2 January 2020

review article

1 reference

title

The X family portrait: structural insights into biological functions of X family polymerases (English)

1 reference

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2 January 2020

6

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2 January 2020

Samuel H. Wilson

7

1 reference

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2 January 2020

Lars C Pedersen

8

1 reference

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2 January 2020

author name string

Andrea F Moon

1

1 reference

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2 January 2020

Miguel Garcia-Diaz

2

1 reference

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2 January 2020

Vinod K Batra

3

1 reference

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2 January 2020

William A Beard

4

1 reference

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2 January 2020

Katarzyna Bebenek

5

1 reference

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2 January 2020

language of work or name

1 reference

12 July 2007

1 reference

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2 January 2020

1 reference

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2 January 2020

volume

6

1 reference

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2 January 2020

issue

12

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2 January 2020

page(s)

1709-1725

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Regulation of DNA repair fidelity by molecular checkpoints: "gates" in DNA polymerase beta's substrate selection

2 January 2020

cites work

1 reference

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Structural insight into the substrate specificity of DNA Polymerase mu

1 October 2017

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Structure of DNA polymerase beta with a benzo[c]phenanthrene diol epoxide-adducted template exhibits mutagenic features

1 October 2017

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A specific loop in human DNA polymerase mu allows switching between creative and DNA-instructed synthesis

1 October 2017

1 reference

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Energy analysis of chemistry for correct insertion by DNA polymerase beta

1 October 2017

1 reference

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Nonoverlapping functions of DNA polymerases mu, lambda, and terminal deoxynucleotidyltransferase during immunoglobulin V(D)J recombination in vivo

1 October 2017

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The polymerases for V(D)J recombination

1 October 2017

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Promiscuous mismatch extension by human DNA polymerase lambda

1 October 2017

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Activities and mechanism of DNA polymerase beta

1 October 2017

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Magnesium-induced assembly of a complete DNA polymerase catalytic complex.

1 October 2017

1 reference

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Mechanism of a genetic glissando: structural biology of indel mutations.

1 October 2017

1 reference

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Structure and mechanism of DNA polymerase Beta.

1 October 2017

1 reference

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Structure-function studies of DNA polymerase lambda.

1 October 2017

1 reference

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Repair of double-strand DNA breaks by the human nonhomologous DNA end joining pathway: the iterative processing model

1 October 2017

1 reference

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A gradient of template dependence defines distinct biological roles for family X polymerases in nonhomologous end joining

1 October 2017

1 reference

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DNA polymerase lambda mediates a back-up base excision repair activity in extracts of mouse embryonic fibroblasts

1 October 2017

1 reference

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A closed conformation for the Pol lambda catalytic cycle.

1 October 2017

1 reference

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Functions of DNA polymerases

1 October 2017

1 reference

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A biochemically defined system for mammalian nonhomologous DNA end joining

1 October 2017

1 reference

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Repair and genetic consequences of endogenous DNA base damage in mammalian cells

1 October 2017

1 reference

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Pre-steady-state kinetic studies of the fidelity of human DNA polymerase mu.

1 October 2017

1 reference

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DNA polymerase lambda can elongate on DNA substrates mimicking non-homologous end joining and interact with XRCC4-ligase IV complex

1 October 2017

1 reference

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Sibling rivalry: competition between Pol X family members in V(D)J recombination and general double strand break repair

1 October 2017

1 reference

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The role of the non-homologous end-joining pathway in lymphocyte development

1 October 2017

1 reference

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1 October 2017

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Highly organized but pliant active site of DNA polymerase beta: compensatory mechanisms in mutant enzymes revealed by dynamics simulations and energy analyses.

1 October 2017

1 reference

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A structural solution for the DNA polymerase lambda-dependent repair of DNA gaps with minimal homology

1 October 2017

1 reference

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Mutagenesis of human DNA polymerase lambda: essential roles of Tyr505 and Phe506 for both DNA polymerase and terminal transferase activities

1 October 2017

1 reference

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Implication of DNA polymerase lambda in alignment-based gap filling for nonhomologous DNA end joining in human nuclear extracts.

1 October 2017

1 reference

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Immunoglobulin kappa light chain gene rearrangement is impaired in mice deficient for DNA polymerase mu

1 October 2017

1 reference

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Lack of sugar discrimination by human Pol mu requires a single glycine residue

1 October 2017

1 reference

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Streisinger revisited: DNA synthesis errors mediated by substrate misalignments

1 October 2017

1 reference

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Structural Insights into the Origins of DNA Polymerase Fidelity

1 October 2017

1 reference

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Polymerase mu is a DNA-directed DNA/RNA polymerase

1 October 2017

1 reference

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Damage repair DNA polymerases Y.

1 October 2017

1 reference

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Structure of DNA polymerase beta with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential

1 October 2017

1 reference

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Efficiency of correct nucleotide insertion governs DNA polymerase fidelity.

1 October 2017

1 reference

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Human DNA polymerase lambda functionally and physically interacts with proliferating cell nuclear antigen in normal and translesion DNA synthesis

1 October 2017

1 reference

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Association of DNA polymerase mu (pol mu) with Ku and ligase IV: role for pol mu in end-joining double-strand break repair

1 October 2017

1 reference

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Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase

1 October 2017

1 reference

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Highly frequent frameshift DNA synthesis by human DNA polymerase mu

1 October 2017

1 reference

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Identification of an intrinsic 5'-deoxyribose-5-phosphate lyase activity in human DNA polymerase lambda: a possible role in base excision repair

1 October 2017

1 reference

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Two novel human and mouse DNA polymerases of the polX family

1 October 2017

1 reference

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The lyase activity of the DNA repair protein beta-polymerase protects from DNA-damage-induced cytotoxicity

1 October 2017

1 reference

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DNA polymerase mu (Pol mu), homologous to TdT, could act as a DNA mutator in eukaryotic cells

1 October 2017

1 reference

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8-oxodGTP incorporation by DNA polymerase beta is modified by active-site residue Asn279.

1 October 2017

1 reference

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Structure of an XRCC1 BRCT domain: a new protein-protein interaction module

1 October 2017

1 reference

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Functional analysis of the amino-terminal 8-kDa domain of DNA polymerase beta as revealed by site-directed mutagenesis. DNA binding and 5'-deoxyribose phosphate lyase activities

1 October 2017

1 reference

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Crystal Structures of Human DNA Polymerase β Complexed with Gapped and Nicked DNA: Evidence for an Induced Fit Mechanism,

1 October 2017

1 reference

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DNA polymerase beta in abasic site repair: a structurally conserved helix-hairpin-helix motif in lesion detection by base excision repair enzymes

1 October 2017

1 reference

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A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins

1 October 2017

1 reference

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Mice lacking terminal deoxynucleotidyl transferase: adult mice with a fetal antigen receptor repertoire

1 October 2017

1 reference

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The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

1 October 2017

1 reference

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Structure-function analysis of the mammalian DNA polymerase beta active site: role of aspartic acid 256, arginine 254, and arginine 258 in nucleotidyl transfer

1 October 2017

1 reference

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Short gap-filling synthesis by DNA polymerase beta is processive.

1 October 2017

1 reference

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Studies of gapped DNA substrate binding by mammalian DNA polymerase beta. Dependence on 5'-phosphate group

1 October 2017

1 reference

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Excision of deoxyribose phosphate residues by DNA polymerase beta during DNA repair

1 October 2017

1 reference

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Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism

1 October 2017

1 reference

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Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

1 October 2017

1 reference

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Stereochemical course of the 3'----5'-exonuclease activity of DNA polymerase I.

1 October 2017

1 reference

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Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday

1 October 2017

1 reference

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A study of the mechanism of DNA polymerase I from Escherichia coli with diastereomeric phosphorothioate analogs of deoxyadenosine triphosphate

1 October 2017

1 reference

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Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate

1 October 2017

1 reference

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Polymerase beta simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se.

29 June 2018

1 reference

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Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes.

29 June 2018

1 reference

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The mutational specificity of DNA polymerase-beta during in vitro DNA synthesis. Production of frameshift, base substitution, and deletion mutations

29 June 2018

1 reference

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Structural insight into the DNA polymerase beta deoxyribose phosphate lyase mechanism.

29 June 2018

1 reference

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To slip or skip, visualizing frameshift mutation dynamics for error-prone DNA polymerases

22 September 2018

1 reference

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Influence of DNA structure on DNA polymerase beta active site function: extension of mutagenic DNA intermediates.

22 September 2018

1 reference

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The frameshift infidelity of human DNA polymerase lambda. Implications for function.

22 September 2018

1 reference

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Lesion bypass activities of human DNA polymerase mu.

22 September 2018

1 reference

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DNA polymerase lambda, a novel DNA repair enzyme in human cells.

22 September 2018

1 reference

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Terminal deoxynucleotidyl transferase indiscriminately incorporates ribonucleotides and deoxyribonucleotides

22 September 2018

1 reference

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Mammalian abasic site base excision repair. Identification of the reaction sequence and rate-determining steps

22 September 2018

1 reference

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Enzyme-DNA interactions required for efficient nucleotide incorporation and discrimination in human DNA polymerase beta.

22 September 2018

1 reference

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Construction and expression of a chimeric gene encoding human terminal deoxynucleotidyltransferase and DNA polymerase β

22 September 2018

1 reference

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Structural analysis of strand misalignment during DNA synthesis by a human DNA polymerase

22 September 2018

1 reference

12 December 2020

Structural insights into DNA polymerase beta deterrents for misincorporation support an induced-fit mechanism for fidelity

1 reference

12 December 2020

A unified polymerase mechanism for nonhomologous DNA and RNA polymerases

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12 December 2020

Polymerase structures and mechanism.

1 reference

12 December 2020

DNA polymerase beta conducts the gap-filling step in uracil-initiated base excision repair in a bovine testis nuclear extract.

1 reference

12 December 2020

Minor groove interactions at the DNA polymerase beta active site modulate single-base deletion error rates

1 reference

12 December 2020

Evidence for an imino intermediate in the DNA polymerase beta deoxyribose phosphate excision reaction

1 reference

12 December 2020

Structural insights into DNA polymerase beta fidelity: hold tight if you want it right

1 reference

12 December 2020

Base substitution specificity of DNA polymerase beta depends on interactions in the DNA minor groove

1 reference

12 December 2020

10.1016/J.DNAREP.2007.05.009

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17631059%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17631059%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

17631059

1 reference