RNA-Seq methods for transcriptome analysis (Q26747608)

8 January 2018

review article

1 reference

title

RNA-Seq methods for transcriptome analysis (English)

1 reference

8 January 2018

0 references

0 references

1 reference

1 reference

Radmila Hrdlickova

1

1 reference

8 January 2018

Masoud Toloue

series ordinal

2

1 reference

8 January 2018

Bin Tian

series ordinal

3

1 reference

8 January 2018

publication date

19 May 2016

1 reference

8 January 2018

Wiley interdisciplinary reviews. RNA

published in

1 reference

8 January 2018

volume

8

1 reference

8 January 2018

issue

1

1 reference

8 January 2018

Expression monitoring by hybridization to high-density oligonucleotide arrays

cites work

1 reference

Advanced Applications of RNA Sequencing and Challenges

20 April 2017

1 reference

The primary transcriptome of the major human pathogen Helicobacter pylori

20 April 2017

1 reference

Ribonuclease III mechanisms of double-stranded RNA cleavage

20 April 2017

1 reference

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

20 April 2017

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

20 April 2017

1 reference

The Sequence Alignment/Map format and SAMtools

20 April 2017

1 reference

Alternative cleavage and polyadenylation: the long and short of it

20 April 2017

1 reference

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs

20 April 2017

1 reference

Alternative isoform regulation in human tissue transcriptomes

20 April 2017

1 reference

PacBio Sequencing and Its Applications

20 April 2017

1 reference

Single-cell RNA-seq: advances and future challenges

20 April 2017

1 reference

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

20 April 2017

1 reference

mRNA-Seq whole-transcriptome analysis of a single cell

20 April 2017

1 reference

Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity

20 April 2017

1 reference

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

20 April 2017

1 reference

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

20 April 2017

1 reference

Splicing noncoding RNAs from the inside out

20 April 2017

1 reference

Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

20 April 2017

1 reference

Nascent transcript sequencing visualizes transcription at nucleotide resolution

20 April 2017

1 reference

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

20 April 2017

1 reference

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

20 April 2017

1 reference

An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

20 April 2017

1 reference

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

20 April 2017

1 reference

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

20 April 2017

1 reference

Targeted reduction of highly abundant transcripts using pseudo-random primers.

20 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Gene fusions in soft tissue tumors: Recurrent and overlapping pathogenetic themes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

TARDIS, a targeted RNA directional sequencing method for rare RNA discovery

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Single-Cell Analysis in Cancer Genomics

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

An Efficient Method for Identifying Gene Fusions by Targeted RNA Sequencing from Fresh Frozen and FFPE Samples

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Evaluation of Hybridization Capture Versus Amplicon-Based Methods for Whole-Exome Sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

PAT-seq: a method to study the integration of 3'-UTR dynamics with gene expression in the eukaryotic transcriptome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

The technology and biology of single-cell RNA sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Quantitative T cell repertoire analysis by deep cDNA sequencing of T cell receptor α and β chains using next-generation sequencing (NGS)

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Probe-Directed Degradation (PDD) for Flexible Removal of Unwanted cDNA Sequences from RNA-Seq Libraries

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Single cell transcriptome amplification with MALBAC.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Structural imprints in vivo decode RNA regulatory mechanisms

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Expression profiling. Combinatorial labeling of single cells for gene expression cytometry

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Computational and analytical challenges in single-cell transcriptomics

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Employment of digital gene expression profiling to identify potential pathogenic and therapeutic targets of fulminant hepatic failure

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Stranded Whole Transcriptome RNA-Seq for All RNA Types

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

RIP-Seq data analysis to determine RNA-protein associations.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

RNA-binding proteins in regulation of alternative cleavage and polyadenylation.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Influence of RNA extraction methods and library selection schemes on RNA-seq data

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Next generation sequencing reveals skewing of the T and B cell receptor repertoires in patients with wiskott-Aldrich syndrome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Seeing is believing: new methods for in situ single-cell transcriptomics.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Comparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Selective and flexible depletion of problematic sequences from RNA-seq libraries at the cDNA stage.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Validation of noise models for single-cell transcriptomics

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Sensitive and specific detection of EML4-ALK rearrangements in non-small cell lung cancer (NSCLC) specimens by multiplex amplicon RNA massive parallel sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Digital encoding of cellular mRNAs enabling precise and absolute gene expression measurement by single-molecule counting

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Highly multiplexed subcellular RNA sequencing in situ

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Molecular indexing enables quantitative targeted RNA sequencing and reveals poor efficiencies in standard library preparations

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Library preparation methods for next-generation sequencing: tone down the bias

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Quantitative single-cell RNA-seq with unique molecular identifiers

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Characterization of the human ESC transcriptome by hybrid sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Profiling post-transcriptionally networked mRNA subsets using RIP-Chip and RIP-Seq

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Impact of library preparation on downstream analysis and interpretation of RNA-Seq data: comparison between Illumina PolyA and NuGEN Ovation protocol

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Single-cell sequencing-based technologies will revolutionize whole-organism science

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Comparative analysis of RNA sequencing methods for degraded or low-input samples

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Quantitative transcriptomics using designed primer-based amplification

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

A new method for stranded whole transcriptome RNA-seq

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

State-of-the-art fusion-finder algorithms sensitivity and specificity

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

An efficient method for genome-wide polyadenylation site mapping and RNA quantification

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Improving PacBio long read accuracy by short read alignment

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

RASL-seq for massively parallel and quantitative analysis of gene expression

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

A quantitative atlas of polyadenylation in five mammals

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Counting absolute numbers of molecules using unique molecular identifiers

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

A bias-reducing strategy in profiling small RNAs using Solexa

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

A strand-specific library preparation protocol for RNA sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Coupled pre-mRNA and mRNA dynamics unveil operational strategies underlying transcriptional responses to stimuli.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

A method for counting PCR template molecules with application to next-generation sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Analysis and design of RNA sequencing experiments for identifying isoform regulation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Genome-wide measurement of RNA secondary structure in yeast

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Multi-targeted priming for genome-wide gene expression assays

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Comprehensive comparative analysis of strand-specific RNA sequencing methods

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

3' tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

31 May 2018

Direct RNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Next-generation tag sequencing for cancer gene expression profiling

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Splicing in disease: disruption of the splicing code and the decoding machinery

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Serial analysis of gene expression

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

An 'equalized cDNA library' by the reassociation of short double-stranded cDNAs

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Sequence identification of 2,375 human brain genes

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5717752

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

31 May 2018

1 reference

SOAPfusion: a robust and effective computational fusion discovery tool for RNA-seq reads.

21 January 2018

1 reference

Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of Salvia miltiorrhiza and tanshinone biosynthesis.

21 January 2018

1 reference

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.

21 January 2018

1 reference

Identifying RBP Targets with RIP-seq.

21 January 2018

1 reference

Detection of BCR-ABL transcripts by multiplex and nested PCR in different haematological disorders

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27198714

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/WRNA.1364

1 reference

8 January 2018

PMCID

5717752

1 reference

8 January 2018

PubMed ID

27198714

1 reference

8 January 2018