The Ded1/DDX3 subfamily of DEAD-box RNA helicases (Q38231370)

31 August 2017

title

The Ded1/DDX3 subfamily of DEAD-box RNA helicases (English)

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31 August 2017

Eckhard Jankowsky

2

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author name string

Deepak Sharma

series ordinal

1

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31 August 2017

publication date

1 July 2014

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Critical Reviews in Biochemistry and Molecular Biology

31 August 2017

published in

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31 August 2017

volume

49

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31 August 2017

issue

4

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31 August 2017

page(s)

343-360

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A multidimensional chromatography technology for in-depth phosphoproteome analysis

31 August 2017

cites work

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The DEAD-box RNA helicase Ded1p affects and accumulates in Saccharomyces cerevisiae P-bodies

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Gle1 is a multifunctional DEAD-box protein regulator that modulates Ded1 in translation initiation

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The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

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Oncogenic role of DDX3 in breast cancer biogenesis.

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The molecular evolution of PL10 homologs

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Identification of five putative yeast RNA helicase genes

21 January 2018

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DDX3, a DEAD box RNA helicase with tumor growth-suppressive property and transcriptional regulation activity of the p21waf1/cip1 promoter, is a candidate tumor suppressor

21 January 2018

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DEAD-box proteins can completely separate an RNA duplex using a single ATP.

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Requirement of the DEAD-Box protein ded1p for messenger RNA translation

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The newly discovered Q motif of DEAD-box RNA helicases regulates RNA-binding and helicase activity

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RNA helicase DDX3 is a regulatory subunit of casein kinase 1 in Wnt-β-catenin signaling.

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eIF4E is a central node of an RNA regulon that governs cellular proliferation

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The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation in Saccharomyces cerevisiae.

21 January 2018

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Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones

21 January 2018

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The AZFa gene DBY (DDX3Y) is widely transcribed but the protein is limited to the male germ cells by translation control

21 January 2018

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21 January 2018

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Interactions affected by arginine methylation in the yeast protein-protein interaction network.

21 January 2018

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SF1 and SF2 helicases: family matters

21 January 2018

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Protein displacement by DExH/D "RNA helicases" without duplex unwinding

21 January 2018

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The human Y chromosome's azoospermia factor b (AZFb) region: sequence, structure, and deletion analysis in infertile men.

21 January 2018

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Prognostic role of the recepteur d'origine nantais (RON) expression in ovarian cancer patients.

21 January 2018

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An in vivo control map for the eukaryotic mRNA translation machinery

21 January 2018

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IKKepsilon and TBK1 are essential components of the IRF3 signaling pathway

21 January 2018

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Dbp5, Gle1-IP6 and Nup159: a working model for mRNP export

21 January 2018

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Deletion and expression analysis of AZFa genes on the human Y chromosome revealed a major role for DBY in male infertility

21 January 2018

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Human DEAD-box ATPase DDX3 shows a relaxed nucleoside substrate specificity

21 January 2018

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21 January 2018

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The DEAD box proteins DDX5 (p68) and DDX17 (p72): multi-tasking transcriptional regulators

21 January 2018

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DEAD box RNA helicase functions in cancer

21 January 2018

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A motif unique to the human DEAD-box protein DDX3 is important for nucleic acid binding, ATP hydrolysis, RNA/DNA unwinding and HIV-1 replication

21 January 2018

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Targeting the human DEAD-box polypeptide 3 (DDX3) RNA helicase as a novel strategy to inhibit viral replication

21 January 2018

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The DEAD-box helicase DDX3 supports the assembly of functional 80S ribosomes

21 January 2018

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eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation

21 January 2018

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Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Human DEAD box helicase 3 couples IκB kinase ε to interferon regulatory factor 3 activation.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

AZFa protein DDX3Y is differentially expressed in human male germ cells during development and in testicular tumours: new evidence for phenotypic plasticity of germ cells.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

An3 mRNA encodes an RNA helicase that colocalizes with nucleoli in Xenopus oocytes in a stage-specific manner

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The Xenopus localized messenger RNA An3 may encode an ATP-dependent RNA helicase.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

An3 protein encoded by a localized maternal mRNA in Xenopus laevis is an ATPase with substrate-specific RNA helicase activity

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD-box helicases: posttranslational regulation and function

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

AMPK: a nutrient and energy sensor that maintains energy homeostasis

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

A census of human soluble protein complexes

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

ATP utilization and RNA conformational rearrangement by DEAD-box proteins

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Pathway of ATP utilization and duplex rRNA unwinding by the DEAD-box helicase, DbpA.

21 January 2018

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The DEAD-box protein Ded1 modulates translation by the formation and resolution of an eIF4F-mRNA complex

21 January 2018

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Crystal structure of conserved domains 1 and 2 of the human DEAD-box helicase DDX3X in complex with the mononucleotide AMP

21 January 2018

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Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

21 January 2018

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Diverse cellular transformation capability of overexpressed genes in human hepatocellular carcinoma

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Translational control by the DEAD Box RNA helicase belle regulates ecdysone-triggered transcriptional cascades

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Ribosome profiling: new views of translation, from single codons to genome scale

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

A suppressor of yeastspp81/ded1mutations encodes a very similar putative ATP-dependent RNA helicase

21 January 2018

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A suppressor of a yeast splicing mutation (prp8-1) encodes a putative ATP-dependent RNA helicase

21 January 2018

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RNA helicases at work: binding and rearranging

21 January 2018

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Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases

21 January 2018

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DEAD-box proteins as RNA helicases and chaperones

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Belle is a Drosophila DEAD-box protein required for viability and in the germ line

21 January 2018

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The role of disordered protein regions in the assembly of decapping complexes and RNP granules

21 January 2018

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Poxvirus K7 protein adopts a Bcl-2 fold: biochemical mapping of its interactions with human DEAD box RNA helicase DDX3

21 January 2018

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Kinesin transports RNA: isolation and characterization of an RNA-transporting granule

21 January 2018

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Exporting RNA from the nucleus to the cytoplasm

21 January 2018

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Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition

21 January 2018

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High-definition macromolecular composition of yeast RNA-processing complexes

21 January 2018

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Viral and cellular RNA helicases as antiviral targets

21 January 2018

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DDX3 regulates cell growth through translational control of cyclin E1

21 January 2018

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The DEAD-box RNA helicase DDX3 associates with export messenger ribonucleoproteins as well as tip-associated protein and participates in translational control

21 January 2018

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Quantification of DDX3Y, RBMY1, DAZ and TSPY mRNAs in testes of patients with severe impairment of spermatogenesis.

21 January 2018

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The DEAD-box helicase Vasa: evidence for a multiplicity of functions in RNA processes and developmental biology

21 January 2018

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Sequestration of highly expressed mRNAs in cytoplasmic granules, P-bodies, and stress granules enhances cell viability

21 January 2018

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Structural insights into the exon junction complex

21 January 2018

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EJCs at the heart of translational control

21 January 2018

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Human DDX3 functions in translation and interacts with the translation initiation factor eIF3

21 January 2018

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Cellular DDX3 regulates Japanese encephalitis virus replication by interacting with viral un-translated regions

21 January 2018

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Hepatitis C virus infection activates an innate pathway involving IKK-α in lipogenesis and viral assembly

21 January 2018

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Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae

21 January 2018

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Inducible resistance of tumor cells to tumor necrosis factor-related apoptosis-inducing ligand receptor 2-mediated apoptosis by generation of a blockade at the death domain function.

21 January 2018

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

21 January 2018

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Dead-box proteins: a family affair--active and passive players in RNP-remodeling

21 January 2018

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From unwinding to clamping - the DEAD box RNA helicase family

21 January 2018

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ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

21 January 2018

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DEAD-box helicases form nucleotide-dependent, long-lived complexes with RNA.

21 January 2018

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Molecular characterization of the DDX3Y gene and its homologs in cattle

21 January 2018

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Analysis of the proteome of Saccharomyces cerevisiae for methylarginine.

21 January 2018

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Pharmacophore modeling and molecular docking led to the discovery of inhibitors of human immunodeficiency virus-1 replication targeting the human cellular aspartic acid-glutamic acid-alanine-aspartic acid box polypeptide 3.

21 January 2018

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Hepatitis C virus core protein binds to a DEAD box RNA helicase

21 January 2018

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The mouse Y chromosome interval necessary for spermatogonial proliferation is gene dense with syntenic homology to the human AZFa region.

21 January 2018

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Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Translationally repressed mRNA transiently cycles through stress granules during stress.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export

21 January 2018

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Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production

21 January 2018

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A novel Ded1-like RNA helicase interacts with the Y-box protein ctYB-1 in nuclear mRNP particles and in polysomes

21 January 2018

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Mechanism of ATP turnover inhibition in the EJC

21 January 2018

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Structural basis for targeting of human RNA helicase DDX3 by poxvirus protein K7

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD/H BOX 3 (DDX3) helicase binds the RIG-I adaptor IPS-1 to up-regulate IFN-beta-inducing potential

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Hepatitis C virus core protein interacts with a human DEAD box protein DDX3

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

21 January 2018

Immune sensing of DNA

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD-box RNA helicase Belle/DDX3 and the RNA interference pathway promote mitotic chromosome segregation

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The microRNA pathway regulates the temporal pattern of Notch signaling in Drosophila follicle cells

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The DHH1/RCKp54 family of helicases: an ancient family of proteins that promote translational silencing

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Medulloblastoma exome sequencing uncovers subtype-specific somatic mutations

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

AMP sensing by DEAD-box RNA helicases

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD-box helicases as integrators of RNA, nucleotide and protein binding

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Complex transcriptional control of the AZFa gene DDX3Y in human testis

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Novel mutations target distinct subgroups of medulloblastoma.

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Expression, purification, crystallization and preliminary X-ray diffraction analysis of the DDX3 RNA helicase domain

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The DDX3 subfamily of the DEAD box helicases: divergent roles as unveiled by studying different organisms and in vitro assays

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Proteomic profiling of lipid droplet proteins in hepatoma cell lines expressing hepatitis C virus core protein

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Human DEAD-box protein 3 has multiple functions in gene regulation and cell cycle control and is a prime target for viral manipulation

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Viruses and the human DEAD-box helicase DDX3: inhibition or exploitation?

21 January 2018

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Viral targeting of DEAD box protein 3 reveals its role in TBK1/IKKepsilon-mediated IRF activation

21 January 2018

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Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

21 January 2018

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Evolutionary constraints acting on DDX3X protein potentially interferes with Rev-mediated nuclear export of HIV-1 RNA.

21 January 2018

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Triggering the interferon antiviral response through an IKK-related pathway

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Mutational analysis of human eIF4AIII identifies regions necessary for exon junction complex formation and nonsense-mediated mRNA decay

21 January 2018

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https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Candidate tumor suppressor DDX3 RNA helicase specifically represses cap-dependent translation by acting as an eIF4E inhibitory protein

21 January 2018

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Critical roles of RNA helicase DDX3 and its interactions with eIF4E/PABP1 in stress granule assembly and stress response

21 January 2018

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The role of the DEAD-box RNA helicase DDX3 in mRNA metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD-box protein DDX3 associates with eIF4F to promote translation of selected mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The DEAD-box helicase DDX3X is a critical component of the TANK-binding kinase 1-dependent innate immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Composition and functional characterization of the yeast spliceosomal penta-snRNP.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The mutational landscape of head and neck squamous cell carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Nucleotide sequence and transcriptional mapping of the yeast pet56-his3-ded1 gene region

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Hepatitis C virus core-derived peptides inhibit genotype 1b viral genome replication via interaction with DDX3X

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The role of DDX3 in regulating Snail

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The current understanding of Ded1p/DDX3 homologs from yeast to human

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Pattern recognition receptors and the innate immune response to viral infection

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Global mapping of the yeast genetic interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Molecular dissection of the eukaryotic initiation factor 4E (eIF4E) export-competent RNP

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Hepatitis B virus polymerase blocks pattern recognition receptor signaling via interaction with DDX3: implications for immune evasion

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

SF3B1 and other novel cancer genes in chronic lymphocytic leukemia

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Evolution and survival on eutherian sex chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The zinc finger protein Zn72D and DEAD box helicase Belle interact and control maleless mRNA and protein levels

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Reduced p21(WAF1/CIP1) via alteration of p53-DDX3 pathway is associated with poor relapse-free survival in early-stage human papillomavirus-associated lung cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD-box proteins unwind duplexes by local strand separation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DEAD-box-protein-assisted RNA structure conversion towards and against thermodynamic equilibrium values

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Patterning of the Drosophila oocyte by a sequential translation repression program involving the d4EHP and Belle translational repressors

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

DDX3 RNA helicase is required for HIV-1 Tat function

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Requirement of DDX3 DEAD box RNA helicase for HIV-1 Rev-RRE export function

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

Hepatitis B virus polymerase inhibits RIG-I- and Toll-like receptor 3-mediated beta interferon induction in human hepatocytes through interference with interferon regulatory factor 3 activation and dampening of the interaction between TBK1/IKKepsilo

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409238.2014.931339

10.3109/10409238.2014.931339

21 January 2018

Identifiers

DOI

1 reference

release_oudxapfll5hnbb4b66hgysjapm

31 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/oudxapfll5hnbb4b66hgysjapm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference