Single-cell RNA sequencing to explore immune cell heterogeneity (Q38645486)

5 September 2017

Single-cell RNA sequencing to explore immune cell heterogeneity (English)

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5 September 2017

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Rahul Satija

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Efthymia Papalexi

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object named as

Efthymia Papalexi

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5 September 2017

7 August 2017

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Nature Reviews Immunology

5 September 2017

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Maintaining system homeostasis: the third law of Newtonian immunology

5 September 2017

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Th17 and regulatory T cells in mediating and restraining inflammation

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Regulatory T cells exert checks and balances on self tolerance and autoimmunity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

FOXP3+ regulatory T cells in the human immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell technologies are revolutionizing the approach to rare cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Mass Cytometry: Single Cells, Many Features

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

A deep profiler's guide to cytometry

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell technologies for monitoring immune systems.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell gene-expression profiling and its potential diagnostic applications

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Real time quantitative PCR

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Quantification of mRNA in single cells and modelling of RT-qPCR induced noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Characterization of transcriptional networks in blood stem and progenitor cells using high-throughput single-cell gene expression analysis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Decoding the regulatory network of early blood development from single-cell gene expression measurements.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Differential expression analysis for sequence count data

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

RNA-Seq analysis to capture the transcriptome landscape of a single cell

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Whole transcriptome RNA sequencing data from blood leukocytes derived from Parkinson's disease patients prior to and following deep brain stimulation treatment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Quantitative transcriptomics using designed primer-based amplification

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Densely interconnected transcriptional circuits control cell states in human hematopoiesis

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

mRNA-Seq whole-transcriptome analysis of a single cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Ebola threatens a way of life

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Genomewide characterization of non-polyadenylated RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Transcript amplification from single bacterium for transcriptome analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell RNA-seq: advances and future challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Stochastic regulation in early immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Stochastic effects and bistability in T cell receptor signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Heterogeneity in immune responses: from populations to single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

T cell fate and clonality inference from single-cell transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Aire controls gene expression in the thymic epithelium with ordered stochasticity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRI.2017.76

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Identification of cDC1- and cDC2-committed DC progenitors reveals early lineage priming at the common DC progenitor stage in the bone marrow.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Distinct myeloid progenitor-differentiation pathways identified through single-cell RNA sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell profiling of human megakaryocyte-erythroid progenitors identifies distinct megakaryocyte and erythroid differentiation pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell RNA sequencing reveals molecular and functional platelet bias of aged haematopoietic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Osteoclasts degrade endosteal components and promote mobilization of hematopoietic progenitor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Osteoblastic cells regulate the haematopoietic stem cell niche

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Bone marrow macrophages maintain hematopoietic stem cell (HSC) niches and their depletion mobilizes HSCs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Angiocrine factors from Akt-activated endothelial cells balance self-renewal and differentiation of haematopoietic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Spatial reconstruction of single-cell gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Fluorescent in situ sequencing (FISSEQ) of RNA for gene expression profiling in intact cells and tissues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Clonal tracking of rhesus macaque hematopoiesis highlights a distinct lineage origin for natural killer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Determining lineage pathways from cellular barcoding experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell chromatin accessibility reveals principles of regulatory variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell, locus-specific bisulfite sequencing (SLBS) for direct detection of epimutations in DNA methylation patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Integrated genome and transcriptome sequencing of the same cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Seventeen-colour flow cytometry: unravelling the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRI.2017.76

Massively parallel digital transcriptional profiling of single cells

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28787399

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Technology: The $1,000 genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28787399

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRI.2017.76

1 reference

5 September 2017

1 reference

PubMed ID

28787399