HIV-1 Nef: Taking Control of Protein Trafficking (Q38830464)

6 September 2017

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title

HIV-1 Nef: Taking Control of Protein Trafficking (English)

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6 September 2017

Estela A Pereira

1

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PubMed ID

27161574

6 September 2017

Luis L P daSilva

series ordinal

2

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6 September 2017

10 May 2016

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6 September 2017

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6 September 2017

17

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6 September 2017

976-996

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6 September 2017

9

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Importance of the nef gene for maintenance of high virus loads and for development of AIDS

6 September 2017

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Immunologic and virologic status after 14 to 18 years of infection with an attenuated strain of HIV-1. A report from the Sydney Blood Bank Cohort

21 January 2018

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Pathogenicity and immunogenicity of attenuated, nef-deleted HIV-1 strains in vivo

21 January 2018

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Genomic structure of an attenuated quasi species of HIV-1 from a blood transfusion donor and recipients

21 January 2018

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Genomic sequence of HIV type 1 from four members of the Sydney Blood Bank Cohort of long-term nonprogressors

21 January 2018

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HIV-1 Nef: at the crossroads

21 January 2018

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Association of human immunodeficiency virus Nef protein with actin is myristoylation dependent and influences its subcellular localization.

21 January 2018

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The crystal structure of HIV-1 Nef protein bound to the Fyn kinase SH3 domain suggests a role for this complex in altered T cell receptor signaling

21 January 2018

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Crystal structure of the conserved core of HIV-1 Nef complexed with a Src family SH3 domain

21 January 2018

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Refined solution structure and backbone dynamics of HIV-1 Nef.

21 January 2018

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The CD4 determinant for downregulation by HIV-1 Nef directly binds to Nef. Mapping of the Nef binding surface by NMR.

21 January 2018

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Domain assembly, surface accessibility and sequence conservation in full length HIV-1 Nef.

21 January 2018

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Structural basis of evasion of cellular adaptive immunity by HIV-1 Nef

21 January 2018

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How HIV-1 Nef hijacks the AP-2 clathrin adaptor to downregulate CD4

21 January 2018

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One protein to rule them all: modulation of cell surface receptors and molecules by HIV Nef.

21 January 2018

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Human immunodeficiency virus type 1 Nef mediates sustained membrane expression of tumor necrosis factor and the related cytokine LIGHT on activated T cells

21 January 2018

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HIV-1 Nef-Induced Upregulation of DC-SIGN in Dendritic Cells Promotes Lymphocyte Clustering and Viral Spread

21 January 2018

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HIV-1 Nef impairs MHC class II antigen presentation and surface expression

21 January 2018

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Down-modulation of mature major histocompatibility complex class II and up-regulation of invariant chain cell surface expression are well-conserved functions of human and simian immunodeficiency virus nef alleles.

21 January 2018

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Human immunodeficiency virus-1 Nef expression induces intracellular accumulation of multivesicular bodies and major histocompatibility complex class II complexes: potential role of phosphatidylinositol 3-kinase

21 January 2018

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Serine phosphorylation-independent downregulation of cell-surface CD4 by nef

21 January 2018

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Endocytosis of major histocompatibility complex class I molecules is induced by the HIV–1 Nef protein

21 January 2018

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Nef-Mediated Suppression of T Cell Activation Was Lost in a Lentiviral Lineage that Gave Rise to HIV-1

21 January 2018

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Down-modulation of TCR/CD3 surface complexes after HIV-1 infection is associated with differential expression of the viral regulatory genes

21 January 2018

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Nef proteins from simian immunodeficiency viruses are tetherin antagonists.

21 January 2018

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Species-specific activity of SIV Nef and HIV-1 Vpu in overcoming restriction by tetherin/BST2

21 January 2018

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Human immunodeficiency virus Nef induces rapid internalization of the T-cell coreceptor CD8alphabeta

21 January 2018

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Mechanism for down-regulation of CD28 by Nef.

21 January 2018

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Nef proteins from diverse groups of primate lentiviruses downmodulate CXCR4 to inhibit migration to the chemokine stromal derived factor 1.

21 January 2018

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The Nef protein of human immunodeficiency virus establishes superinfection immunity by a dual strategy to downregulate cell-surface CCR5 and CD4.

21 January 2018

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The Nef protein of human immunodeficiency virus is a broad-spectrum modulator of chemokine receptor cell surface levels that acts independently of classical motifs for receptor endocytosis and Galphai signaling

21 January 2018

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Endogenously expressed HIV-1 nef down-regulates antigen-presenting molecules, not only class I MHC but also CD1a, in immature dendritic cells

21 January 2018

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The Nef protein of HIV-1 induces loss of cell surface costimulatory molecules CD80 and CD86 in APCs

21 January 2018

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Down-regulation of CTLA-4 by HIV-1 Nef protein

21 January 2018

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SERINC3 and SERINC5 restrict HIV-1 infectivity and are counteracted by Nef

21 January 2018

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HIV-1 Nef promotes infection by excluding SERINC5 from virion incorporation

21 January 2018

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Cell Surface Proteomic Map of HIV Infection Reveals Antagonism of Amino Acid Metabolism by Vpu and Nef.

21 January 2018

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Downregulation of cell-surface CD4 expression by simian immunodeficiency virus Nef prevents viral super infection

21 January 2018

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Cell-surface expression of CD4 reduces HIV-1 infectivity by blocking Env incorporation in a Nef- and Vpu-inhibitable manner

21 January 2018

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Inhibition of HIV-1 progeny virion release by cell-surface CD4 is relieved by expression of the viral Nef protein

21 January 2018

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Enhanced CD4 down-modulation by late stage HIV-1 nef alleles is associated with increased Env incorporation and viral replication.

21 January 2018

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The physiological relevance of CD4 receptor down-modulation during HIV infection

21 January 2018

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Cell surface CD4 interferes with the infectivity of HIV-1 particles released from T cells

21 January 2018

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HIV-1 Nef: a master manipulator of the membrane trafficking machinery mediating immune evasion

21 January 2018

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HIV immune evasion disruption of antigen presentation by the HIV Nef protein

21 January 2018

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The activity of Nef on HIV-1 infectivity

21 January 2018

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Intrinsic host restrictions to HIV-1 and mechanisms of viral escape.

21 January 2018

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A dileucine motif in HIV-1 Nef acts as an internalization signal for CD4 downregulation and binds the AP-1 clathrin adaptor

21 January 2018

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Recognition of dileucine-based sorting signals from HIV-1 Nef and LIMP-II by the AP-1 gamma-sigma1 and AP-3 delta-sigma3 hemicomplexes

21 January 2018

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Conservation and diversification of dileucine signal recognition by adaptor protein (AP) complex variants

21 January 2018

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The gamma/sigma1 and alpha/sigma2 hemicomplexes of clathrin adaptors AP-1 and AP-2 harbor the dileucine recognition site

21 January 2018

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Nef interacts with the mu subunit of clathrin adaptor complexes and reveals a cryptic sorting signal in MHC I molecules

21 January 2018

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Mechanism of Nef-induced CD4 endocytosis: Nef connects CD4 with the mu chain of adaptor complexes

21 January 2018

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Cooperative binding of the class I major histocompatibility complex cytoplasmic domain and human immunodeficiency virus type 1 Nef to the endosomal AP-1 complex via its mu subunit

21 January 2018

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The tyrosine binding pocket in the adaptor protein 1 (AP-1) mu1 subunit is necessary for Nef to recruit AP-1 to the major histocompatibility complex class I cytoplasmic tail

21 January 2018

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An MHC-I cytoplasmic domain/HIV-1 Nef fusion protein binds directly to the mu subunit of the AP-1 endosomal coat complex

21 January 2018

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HIV-1 Nef hijacks clathrin coats by stabilizing AP-1:Arf1 polygons

21 January 2018

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The SH3 domain-binding surface and an acidic motif in HIV-1 Nef regulate trafficking of class I MHC complexes

21 January 2018

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Downregulation of CD4 by human immunodeficiency virus type 1 Nef is dependent on clathrin and involves direct interaction of Nef with the AP2 clathrin adaptor.

21 January 2018

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A diacidic motif in human immunodeficiency virus type 1 Nef is a novel determinant of binding to AP-2

21 January 2018

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A basic patch on alpha-adaptin is required for binding of human immunodeficiency virus type 1 Nef and cooperative assembly of a CD4-Nef-AP-2 complex

21 January 2018

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Identification of a novel binding site between HIV type 1 Nef C-terminal flexible loop and AP2 required for Nef-mediated CD4 downregulation

21 January 2018

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Interaction of HIV-1 Nef with the cellular dileucine-based sorting pathway is required for CD4 down-regulation and optimal viral infectivity

21 January 2018

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Mutational analysis of HIV-1 Nef: identification of two mutants that are temperature-sensitive for CD4 downregulation

21 January 2018

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Separable functions of Nef disrupt two aspects of T cell receptor machinery: CD4 expression and CD3 signaling

21 January 2018

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PACS-1 binding to adaptors is required for acidic cluster motif-mediated protein traffic.

21 January 2018

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An interdomain binding site on HIV-1 Nef interacts with PACS-1 and PACS-2 on endosomes to down-regulate MHC-I.

21 January 2018

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HIV-1 Nef targets MHC-I and CD4 for degradation via a final common beta-COP-dependent pathway in T cells

21 January 2018

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Nef-induced CD4 degradation: a diacidic-based motif in Nef functions as a lysosomal targeting signal through the binding of beta-COP in endosomes

21 January 2018

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ARF1 regulates Nef-induced CD4 degradation.

21 January 2018

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Interaction of HIV-1 Nef protein with the host protein Alix promotes lysosomal targeting of CD4 receptor.

21 January 2018

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Interactions between Nef and AIP1 proliferate multivesicular bodies and facilitate egress of HIV-1.

21 January 2018

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Interactions between HIV1 Nef and vacuolar ATPase facilitate the internalization of CD4

21 January 2018

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Viral bimolecular fluorescence complementation: a novel tool to study intracellular vesicular trafficking pathways

21 January 2018

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Proteomic analysis of HIV-1 Nef cellular binding partners reveals a role for exocyst complex proteins in mediating enhancement of intercellular nanotube formation

21 January 2018

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Secretion modification region-derived peptide disrupts HIV-1 Nef's interaction with mortalin and blocks virus and Nef exosome release

21 January 2018

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The human immunodeficiency virus type 1 Nef protein binds the Src-related tyrosine kinase Lck SH2 domain through a novel phosphotyrosine independent mechanism.

21 January 2018

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A Conserved GPG-Motif in the HIV-1 Nef Core Is Required for Principal Nef-Activities.

21 January 2018

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Molecular characterization of HIV-1 Nef and ACOT8 interaction: insights from in silico structural predictions and in vitro functional assays

21 January 2018

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Binding of HIV-1 Nef to a novel thioesterase enzyme correlates with Nef-mediated CD4 down-regulation

21 January 2018

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A novel acyl-CoA thioesterase enhances its enzymatic activity by direct binding with HIV Nef

21 January 2018

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The human thioesterase II protein binds to a site on HIV-1 Nef critical for CD4 down-regulation

21 January 2018

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Mutation of a conserved residue (D123) required for oligomerization of human immunodeficiency virus type 1 Nef protein abolishes interaction with human thioesterase and results in impairment of Nef biological functions

21 January 2018

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Nef induces CD4 endocytosis: requirement for a critical dileucine motif in the membrane-proximal CD4 cytoplasmic domain

21 January 2018

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Role of myristoylation and N-terminal basic residues in membrane association of the human immunodeficiency virus type 1 Nef protein

21 January 2018

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HIV-1 Nef membrane association depends on charge, curvature, composition and sequence.

21 January 2018

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Deletion of N-terminal myristoylation site of HIV Nef abrogates both MHC-1 and CD4 down-regulation

21 January 2018

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Characterization and molecular basis of the oligomeric structure of HIV-1 nef protein

21 January 2018

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Genetic characterization of HIV type 1 Nef-induced vesicle secretion

21 January 2018

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Forty Years of Clathrin-coated Vesicles

21 January 2018

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Adaptor proteins involved in polarized sorting

21 January 2018

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Signals for sorting of transmembrane proteins to endosomes and lysosomes

21 January 2018

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A dileucine motif in HIV-1 Nef is essential for sorting into clathrin-coated pits and for downregulation of CD4

21 January 2018

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Two independent regions of HIV-1 Nef are required for connection with the endocytic pathway through binding to the mu 1 chain of AP1 complex.

21 January 2018

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Interactions of HIV-1 nef with the mu subunits of adaptor protein complexes 1, 2, and 3: role of the dileucine-based sorting motif

21 January 2018

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HIV-1 Nef stabilizes the association of adaptor protein complexes with membranes

21 January 2018

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HIV-1 Nef protein protects infected primary cells against killing by cytotoxic T lymphocytes.

21 January 2018

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Different effects of Nef-mediated HLA class I down-regulation on human immunodeficiency virus type 1-specific CD8(+) T-cell cytolytic activity and cytokine production

21 January 2018

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HIV-1 Vpr does not inhibit CTL-mediated apoptosis of HIV-1 infected cells

21 January 2018

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Nef-mediated resistance of human immunodeficiency virus type 1 to antiviral cytotoxic T lymphocytes

21 January 2018

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The selective downregulation of class I major histocompatibility complex proteins by HIV-1 protects HIV-infected cells from NK cells

21 January 2018

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Direct binding of human immunodeficiency virus type 1 Nef to the major histocompatibility complex class I (MHC-I) cytoplasmic tail disrupts MHC-I trafficking

21 January 2018

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Selective downmodulation of HLA-A and -B by Nef alleles from different groups of primate lentiviruses

21 January 2018

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Intracellular assembly and trafficking of MHC class I molecules

21 January 2018

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Spontaneous internalization of Class I major histocompatibility complex molecules in T lymphoid cells

21 January 2018

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HIV-1 Nef binds a subpopulation of MHC-I throughout its trafficking itinerary and down-regulates MHC-I by perturbing both anterograde and retrograde trafficking

21 January 2018

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HIV-1 Nef disrupts MHC-I trafficking by recruiting AP-1 to the MHC-I cytoplasmic tail

21 January 2018

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HIV-1 Nef-induced down-regulation of MHC class I requires AP-1 and clathrin but not PACS-1 and is impeded by AP-2.

21 January 2018

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The clathrin adaptor complexes as a paradigm for membrane-associated allostery

21 January 2018

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Structural basis for recruitment and activation of the AP-1 clathrin adaptor complex by Arf1

21 January 2018

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HIV-1 Nef stabilizes AP-1 on membranes without inducing ARF1-independent de novo attachment

21 January 2018

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ADP ribosylation factor 1 activity is required to recruit AP-1 to the major histocompatibility complex class I (MHC-I) cytoplasmic tail and disrupt MHC-I trafficking in HIV-1-infected primary T cells

21 January 2018

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HIV-1 Nef disrupts intracellular trafficking of major histocompatibility complex class I, CD4, CD8, and CD28 by distinct pathways that share common elements

21 January 2018

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HIV-1 Nef downregulates MHC-I by a PACS-1- and PI3K-regulated ARF6 endocytic pathway

21 January 2018

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HIV-1 Nef binds PACS-2 to assemble a multikinase cascade that triggers major histocompatibility complex class I (MHC-I) down-regulation: analysis using short interfering RNA and knock-out mice.

21 January 2018

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PACS-1 defines a novel gene family of cytosolic sorting proteins required for trans-Golgi network localization

21 January 2018

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Human immunodeficiency virus type 1 Nef domains required for disruption of major histocompatibility complex class I trafficking are also necessary for coprecipitation of Nef with HLA-A2.

21 January 2018

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The phosphorylation state of an autoregulatory domain controls PACS-1-directed protein traffic

21 January 2018

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The plasma membrane as a combat zone in the HIV battlefield

21 January 2018

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HIV-1 Nef assembles a Src family kinase-ZAP-70/Syk-PI3K cascade to downregulate cell-surface MHC-I.

21 January 2018

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HIV-1 Nef blocks transport of MHC class I molecules to the cell surface via a PI 3-kinase-dependent pathway

21 January 2018

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Distinct trafficking pathways mediate Nef-induced and clathrin-dependent major histocompatibility complex class I down-regulation.

21 January 2018

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Small molecule inhibition of HIV-1-induced MHC-I down-regulation identifies a temporally regulated switch in Nef action

21 January 2018

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Cluster of differentiation antigen 4 (CD4) endocytosis and adaptor complex binding require activation of the CD4 endocytosis signal by serine phosphorylation

21 January 2018

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The protein tyrosine kinase p56lck inhibits CD4 endocytosis by preventing entry of CD4 into coated pits

21 January 2018

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CD4 down-regulation by nef alleles isolated from human immunodeficiency virus type 1-infected individuals

21 January 2018

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Nef-mediated downregulation of CD4 enhances human immunodeficiency virus type 1 replication in primary T lymphocytes

21 January 2018

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Dynamic interaction of HIV-1 Nef with the clathrin-mediated endocytic pathway at the plasma membrane.

21 January 2018

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Co-localization of HIV-1 Nef with the AP-2 adaptor protein complex correlates with Nef-induced CD4 down-regulation

21 January 2018

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HIV Nef-mediated CD4 down-regulation is adaptor protein complex 2 dependent

21 January 2018

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Nef-CD4 physical interaction sensed with the yeast two-hybrid system

21 January 2018

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Direct in vitro binding of full-length human immunodeficiency virus type 1 Nef protein to CD4 cytoplasmic domain

21 January 2018

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Human immunodeficiency virus type 1 Nef and p56lck protein-tyrosine kinase interact with a common element in CD4 cytoplasmic tail

21 January 2018

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A structural explanation for the binding of endocytic dileucine motifs by the AP2 complex

21 January 2018

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AP-2 Is the Crucial Clathrin Adaptor Protein for CD4 Downmodulation by HIV-1 Nef in Infected Primary CD4+ T Cells

21 January 2018

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Genome-wide shRNA screening identifies host factors involved in early endocytic events for HIV-1-induced CD4 down-regulation

21 January 2018

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Dynamin 2 is required for the enhancement of HIV-1 infectivity by Nef.

21 January 2018

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The Nef-like effect of murine leukemia virus glycosylated gag on HIV-1 infectivity is mediated by its cytoplasmic domain and depends on the AP-2 adaptor complex

21 January 2018

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Nef neutralizes the ability of exosomes from CD4+ T cells to act as decoys during HIV-1 infection

21 January 2018

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Human immunodeficiency virus type 1 Nef protein targets CD4 to the multivesicular body pathway.

21 January 2018

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Effects of HIV-1 Nef on retrograde transport from the plasma membrane to the endoplasmic reticulum.

21 January 2018

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AP-3 regulates PAR1 ubiquitin-independent MVB/lysosomal sorting via an ALIX-mediated pathway.

21 January 2018

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Localization of the AP-3 adaptor complex defines a novel endosomal exit site for lysosomal membrane proteins

21 January 2018

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Leucine-specific, functional interactions between human immunodeficiency virus type 1 Nef and adaptor protein complexes

21 January 2018

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Membrane traffic within the Golgi apparatus

21 January 2018

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Inhibition of endosome function in CHO cells bearing a temperature-sensitive defect in the coatomer (COPI) component epsilon-COP.

21 January 2018

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Functional dissection of COP-I subunits in the biogenesis of multivesicular endosomes

21 January 2018

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An endosomal beta COP is involved in the pH-dependent formation of transport vesicles destined for late endosomes

21 January 2018

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Genetic and functional diversity of human immunodeficiency virus type 1 subtype B Nef primary isolates

21 January 2018

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Nef-induced CD4 downregulation: a diacidic sequence in human immunodeficiency virus type 1 Nef does not function as a protein sorting motif through direct binding to beta-COP.

21 January 2018

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Extracellular vesicles: exosomes, microvesicles, and friends

21 January 2018

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Nef-induced alteration of the early/recycling endosomal compartment correlates with enhancement of HIV-1 infectivity

21 January 2018

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Nef proteins encoded by human and simian immunodeficiency viruses induce the accumulation of endosomes and lysosomes in human T cells

21 January 2018

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HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells

21 January 2018

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21 January 2018

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21 January 2018

ESCRTs are everywhere

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How ubiquitin functions with ESCRTs

21 January 2018

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Requirements for the selective degradation of CD4 receptor molecules by the human immunodeficiency virus type 1 Vpu protein in the endoplasmic reticulum.

21 January 2018

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A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motif

21 January 2018

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Multilayered mechanism of CD4 downregulation by HIV-1 Vpu involving distinct ER retention and ERAD targeting steps

21 January 2018

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Lysine 144, a ubiquitin attachment site in HIV-1 Nef, is required for Nef-mediated CD4 down-regulation

21 January 2018

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Role of mammalian vacuolar protein-sorting proteins in endocytic trafficking of a non-ubiquitinated G protein-coupled receptor to lysosomes

21 January 2018

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The role of ubiquitination in lysosomal trafficking of δ-opioid receptors

21 January 2018

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Ubiquitin-independent binding of Hrs mediates endosomal sorting of the interleukin-2 receptor beta-chain

21 January 2018

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Ubiquitination differentially regulates clathrin-dependent internalization of protease-activated receptor-1

21 January 2018

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ALIX binds a YPX(3)L motif of the GPCR PAR1 and mediates ubiquitin-independent ESCRT-III/MVB sorting

21 January 2018

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ALIX and the multivesicular endosome: ALIX in Wonderland

21 January 2018

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Interactions between SIVNef, SIVGagPol and Alix correlate with viral replication and progression to AIDS in rhesus macaques

21 January 2018

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Downregulation of cell surface receptors by the K3 family of viral and cellular ubiquitin E3 ligases.

21 January 2018

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Ubiquitylation of MHC class I by the K3 viral protein signals internalization and TSG101-dependent degradation

21 January 2018

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Exosomes and HIV Gag bud from endosome-like domains of the T cell plasma membrane

21 January 2018

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Exosomes: Implications in HIV-1 Pathogenesis

21 January 2018

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Exosome Biogenesis, Regulation, and Function in Viral Infection

21 January 2018

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Human semen contains exosomes with potent anti-HIV-1 activity.

21 January 2018

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HIV Type 1 Nef is released from infected cells in CD45(+) microvesicles and is present in the plasma of HIV-infected individuals

21 January 2018

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The HIV Nef protein modulates cellular and exosomal miRNA profiles in human monocytic cells

21 January 2018

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The HIV-1 Nef protein binds argonaute-2 and functions as a viral suppressor of RNA interference

21 January 2018

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Exosomes from human immunodeficiency virus type 1 (HIV-1)-infected cells license quiescent CD4+ T lymphocytes to replicate HIV-1 through a Nef- and ADAM17-dependent mechanism.

21 January 2018

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ADAM-17: the enzyme that does it all.

21 January 2018

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Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles

21 January 2018

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Exosomes are unlikely involved in intercellular Nef transfer

21 January 2018

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HIV F/3' orf encodes a phosphorylated GTP-binding protein resembling an oncogene product

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/TRA.12412

1 reference

6 September 2017

1 reference

PubMed ID

27161574